Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,238,599 – 6,238,712 |
Length | 113 |
Max. P | 0.684917 |
Location | 6,238,599 – 6,238,712 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 76.92 |
Mean single sequence MFE | -35.60 |
Consensus MFE | -19.15 |
Energy contribution | -21.63 |
Covariance contribution | 2.48 |
Combinations/Pair | 1.19 |
Mean z-score | -1.84 |
Structure conservation index | 0.54 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.684917 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6238599 113 + 27905053 CAGUUCGGAUAGGAGCUGGCCAGCCUUCGCUGUCUAUCGAUAGCCAGCGAUAGUUGCGUAUAUCGCCAGUCGGAUCGACAGUGCAUUUUAUACAUUAUAUAUGGUGCAUU-AUA ((((((......))))))((((((..((((((.(((....))).))))))..)))).)).........((((...))))(((((((..((((.....))))..)))))))-... ( -36.50) >DroSec_CAF1 1517 99 + 1 CGGUUCGGAUUGGAGCUGGCCAGCCAUCGCUGUCUAUCGAUAGCCAGCGAUGGUUGCGUAUAUCGCCGGUCGGGUCGACAGUGCAUUUUAUACAUU---------------AUA ......(.((((((.(((((((((((((((((.(((....))).)))))))))))(((.....))).)))))).))..)))).)............---------------... ( -38.60) >DroSim_CAF1 4377 113 + 1 CGGUUCGGAUUGGAGCUGGCCAACCUUCGCUGUCUAUCGAUAGCCAGCGAUGGUUGCGUAUAUCGCCGGUCGGGUCGACAGUGCAUUUUAUACAUUAUAUACAGUGCAUU-AUA (((..((.(((((.....(((((((.((((((.(((....))).)))))).))))).))......)))))))..)))..((((((((.((((.....)))).))))))))-... ( -42.20) >DroEre_CAF1 6002 104 + 1 CGAUUCGGCUUGAAGCUGGCCAGCCUGCGGUGUAUAUCGAUAGCCA-CGAUGGUAACGUAUAUCGCCAGUCGGAUCGGCAGUGCAUUAU-UAC--------CCGCGCACUCUUA ((((((((((....((.((....)).))((((.((((((...(((.-....)))..)).))))))))))))))))))..(((((.....-...--------....))))).... ( -34.60) >DroYak_CAF1 4184 97 + 1 CGAUUCGGAUUGGAGCUGGCCAGCUUUCGGUGACUAUCGAUAG---------GUAGCGUAUAUCGCCAGUCGAAGCAAAAGUGCAUUAUAUAC--------CCGCGCACUUUUA .(.(((((...((((((....)))))).((((((((((....)---------))))......)))))..))))).)((((((((.........--------....)))))))). ( -26.12) >consensus CGGUUCGGAUUGGAGCUGGCCAGCCUUCGCUGUCUAUCGAUAGCCAGCGAUGGUUGCGUAUAUCGCCAGUCGGAUCGACAGUGCAUUUUAUACAUU_____CCGCGCACU_AUA (((((((.......(((((((((((.((((((.(((....))).)))))).)))))........)))))))))))))..................................... (-19.15 = -21.63 + 2.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:17 2006