Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 883,168 – 883,288 |
Length | 120 |
Max. P | 0.546600 |
Location | 883,168 – 883,288 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.31 |
Mean single sequence MFE | -43.21 |
Consensus MFE | -36.01 |
Energy contribution | -36.57 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.07 |
Mean z-score | -2.01 |
Structure conservation index | 0.83 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.546600 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 883168 120 - 27905053 AAGAGCCAAGGAGCCGAGGUGGAAAUGCCGGACAAAGAAAGCGGGCAGCAUGUGGGCGGUACGAUACACAUACAUAUCAGCAGUAUCUGGCCUGGUUGAAAACGGCGGCCCACACGGACA ............((((..((((...(((((........((.(((((.(.(((((..((...))...))))).)....(((......)))))))).)).....)))))..)))).))).). ( -34.32) >DroSec_CAF1 51315 119 - 1 AAGAUCCAAGGAGCCAAAGUAGAAAUGCCGGACAAAGAAAGCGGGCAGCGUGUGGGCGGCACGGC-CACAUACAUAUCAGCGGUAUCUGGCCUGGCUGAAAACGGCGGCCCACACGGGCA ....((....))(((..........((((.(.(.......)).)))).(((((((((..((.(((-((.((((.........)))).)))))))((((....)))).)))))))))))). ( -47.60) >DroSim_CAF1 50533 119 - 1 AAGAGCCAAGGAGCCAAAGUGGAAAUGCCGGACAAAGAAAGCGGGCAGCGUGUGGGCGGCACGGC-CACAUACAUAUCAGCGGUAUCUGGCCUGGCUGAAAACGGCGGCCCACACGGGCA ....(((......((.....))...((((.(.(.......)).)))).(((((((((..((.(((-((.((((.........)))).)))))))((((....)))).)))))))))))). ( -47.70) >consensus AAGAGCCAAGGAGCCAAAGUGGAAAUGCCGGACAAAGAAAGCGGGCAGCGUGUGGGCGGCACGGC_CACAUACAUAUCAGCGGUAUCUGGCCUGGCUGAAAACGGCGGCCCACACGGGCA ............(((..........((((.(.(.......)).)))).(((((((((.((..(.....).......((((((((.....)))..))))).....)).)))))))))))). (-36.01 = -36.57 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:54 2006