| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,236,034 – 6,236,134 |
| Length | 100 |
| Max. P | 0.802888 |
| Location | 6,236,034 – 6,236,134 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 67.94 |
| Mean single sequence MFE | -26.95 |
| Consensus MFE | -15.76 |
| Energy contribution | -15.41 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.802888 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6236034 100 - 27905053 ---GGAAUUAAA-U----UAAACAUUGUUUUGCUCCACCAUUA-----CCUUAGGUGGGUUUCAAGGGAUUCGCCAUUGCUCCGGAAGCUCAAUCCGCUUUUGGGGAGUUCCA ---((((((...-.----.........................-----.....(((((((((....)))))))))....((((((((((.......)))))))))))))))). ( -30.00) >DroSim_CAF1 1564 103 - 1 ---AUAAUUAAA-UCAACUAAACGUGAUU-UUUUUCAUCUUUA-----CCUCAGGUGGGUUUCAAGGGAUUCGCCAUUGCUCCAGAAGCUCAAUCCGCUUUUGGGGAGUUCCA ---.........-.....((((.((((..-....)))).))))-----.....(((((((((....)))))))))....((((((((((.......))))))))))....... ( -27.60) >DroEre_CAF1 3359 103 - 1 ---AUAAUUAAA-UCAAUUAAACAUGGGC-UUCUUCAUUGUUA-----CCUCAGGUGGGCUUCAAGGGAUUCGCCAUUGCUCCGGAAGCUCAAUCCGCAUUUGGGGAGUUCCA ---.........-...........(((..-(((((((.(((.(-----((...)))(((((((...(((...((....))))).))))))).....)))..)))))))..))) ( -24.80) >DroYak_CAF1 1567 95 - 1 ---AUAAUUAA--UCA-UUAAUAA-------UCUUCAUUGUCA-----CCUCAGGUGGGCUUCAAGGGAUUCGCCAUUGCUCCGGAAGCUCAAUCGGCAUUUGGGGAGUUCCA ---........--...-.......-------((((((.(((((-----((...)))(((((((...(((...((....))))).)))))))....))))..))))))...... ( -23.40) >DroMoj_CAF1 3300 96 - 1 UUU---------GUAA-UCAGCA-------UUUUCCAUUGUUGCCACACUUUAGGUCGGCUUCAAGGGAUUUGCUAUUGCGCCAGAAGCCCUUGCGGCCAGCGGCGAAUUCCA ...---------((((-(.((((-------..((((.(((..(((((.(....))).)))..)))))))..)))))))))(((....(((.....)))....)))........ ( -29.70) >DroAna_CAF1 1807 82 - 1 ---AUACU------CAACCAAAC----------UUCGU------------ACAGGUCGGCUUCAAGGGCUUUGCCAUUGCUCCGGAGGCUCAGGCUGCCUUUGGAGAGUUCCA ---.....------.........----------.....------------...((....((((((((((...(((...(((.....)))...))).))))))))))....)). ( -26.20) >consensus ___AUAAUUAA__UCA_UUAAACA______UUCUUCAUUGUUA_____CCUCAGGUGGGCUUCAAGGGAUUCGCCAUUGCUCCGGAAGCUCAAUCCGCAUUUGGGGAGUUCCA .................................((((((..............))))))......(((((((((....))((((((.((.......)).))))))))))))). (-15.76 = -15.41 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:16 2006