Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,233,448 – 6,233,621 |
Length | 173 |
Max. P | 0.977336 |
Location | 6,233,448 – 6,233,547 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 93.60 |
Mean single sequence MFE | -31.12 |
Consensus MFE | -30.31 |
Energy contribution | -30.25 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.10 |
Mean z-score | -1.30 |
Structure conservation index | 0.97 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.575318 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6233448 99 - 27905053 AAGCCCGCUGCUGGGUUUCUUCAUGACUGCACUUUGUUCAGCUCUAAAACCCGGCGCACUGAACCCGGCAUCAGUUUUGCCGGUUAUAGGAUCGGCUCU .((((.((.(((((((((......(((((.((...)).))).))..))))))))))).(((...((((((.......))))))...)))....)))).. ( -34.70) >DroSec_CAF1 6487 99 - 1 AAGCCCGCUGCUGGGUUUCUUCAUGACUGCACUUUGUUCGGCUUUAAAACCCGGCGCACUGAACCCGGCAUCAGUUAUGCCGGUUAUAGGAUCGGUUCG .((((.((.(((((((((.....(((..((.....)))))......))))))))))).(((...(((((((.....)))))))...)))....)))).. ( -31.80) >DroSim_CAF1 8770 99 - 1 AAGCCCGCUGCUGGGUUUCUUCAUGACUGCACUUUGUUCGGCUUUAAAACCCGGCGCACUGAACCCGGCAUCAGUUAUGCCGGUUAUAGGAUCGGUUCG .((((.((.(((((((((.....(((..((.....)))))......))))))))))).(((...(((((((.....)))))))...)))....)))).. ( -31.80) >DroYak_CAF1 6634 98 - 1 AAGCCCGCUUCUGGGUUUCUUCAUGACUGCACUUUGUUCGGCUUCAAAACCCGGCGCACUGAACCCGGCAUCAACUAUGCUGGUUAUAGAAUCGGUUU- (((((.((..((((((((.....(((..((.(.......))).))))))))))).)).(((...(((((((.....)))))))...)))....)))))- ( -26.20) >consensus AAGCCCGCUGCUGGGUUUCUUCAUGACUGCACUUUGUUCGGCUUUAAAACCCGGCGCACUGAACCCGGCAUCAGUUAUGCCGGUUAUAGGAUCGGUUCG .((((.((.(((((((((.....(((..((.....)))))......))))))))))).(((...(((((((.....)))))))...)))....)))).. (-30.31 = -30.25 + -0.06)
Location | 6,233,522 – 6,233,621 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 74.41 |
Mean single sequence MFE | -26.82 |
Consensus MFE | -13.91 |
Energy contribution | -16.42 |
Covariance contribution | 2.50 |
Combinations/Pair | 1.13 |
Mean z-score | -2.32 |
Structure conservation index | 0.52 |
SVM decision value | 1.79 |
SVM RNA-class probability | 0.977336 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6233522 99 + 27905053 ---------------CAUGAAGAAACCCAGCAGCGGGCUUCAAA-AUUUUUGGUAAUUCGGCAUAAAAAUGUCGAGCAUGCCAGCAAAACAGAA--CGCCAAUUGCCGGGAUCAGCA ---------------..........(((.((((..((((((...-....((((((.((((((((....))))))))..)))))).......)))--.)))..)))).)))....... ( -31.24) >DroPse_CAF1 7334 86 + 1 ----------------ACAAACAGA-----UAGAAAACUUCGUAAAUUCAUAUAAAUUCUGCAUAAAAAUGUCGAGCACGCCAGAAAA----------UGAAUUGCAGCGCUCAGCG ----------------.........-----...........((((.(((((.....(((.((((....)))).)))..(....)...)----------)))))))).((.....)). ( -9.00) >DroSec_CAF1 6561 99 + 1 ---------------CAUGAAGAAACCCAGCAGCGGGCUUCACA-AUUUUUGGUAAUUCGGCAUAAAAAUGUCGAGCAUGCCAGCAAAACAGAA--CGCCAAUUGCCGGGAUCAGCA ---------------..........(((.((((..((((((...-....((((((.((((((((....))))))))..)))))).......)))--.)))..)))).)))....... ( -31.24) >DroSim_CAF1 8844 99 + 1 ---------------CAUGAAGAAACCCAGCAGCGGGCUUCACA-AUUUUUGGUAAUUCGGCAUAAAAAUGUCGAGCAUGCCAGCAAAACAGAA--CGCCAAUUGCCGGGAUCAGCA ---------------..........(((.((((..((((((...-....((((((.((((((((....))))))))..)))))).......)))--.)))..)))).)))....... ( -31.24) >DroYak_CAF1 6707 99 + 1 ---------------CAUGAAGAAACCCAGAAGCGGGCUUUAGA-AUUUUUGGUAAUUCGGCAGAAAAAUGUCGAGCAUGCCAGCAAAACAGAA--AGCCAAUUGCCGGGAUCAGCG ---------------..........(((.(.....((((((...-.(((((((((.(((((((......)))))))..)))))).)))....))--)))).....).)))....... ( -27.90) >DroAna_CAF1 9105 115 + 1 AACCAACUAAAAACAAAUGAAAUGAGUCGAAAGCUUGCUGCGAA-A-UUUUGGUAAUUCGGCAUAAAAAUGUCGAGCACGCCAGAAAGCCAGAAACUGCUAACUGCAGCGAUCAGCG .................(((...(((.(....))))((((((..-.-(((((((..((((((((....))))))))...)))))))(((........)))...))))))..)))... ( -30.30) >consensus _______________CAUGAAGAAACCCAGCAGCGGGCUUCAAA_AUUUUUGGUAAUUCGGCAUAAAAAUGUCGAGCAUGCCAGCAAAACAGAA__CGCCAAUUGCCGGGAUCAGCA .........................(((.((((..(((...........(((((..((((((((....))))))))...))))).............)))..)))).)))....... (-13.91 = -16.42 + 2.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:12 2006