Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,232,649 – 6,232,753 |
Length | 104 |
Max. P | 0.634767 |
Location | 6,232,649 – 6,232,753 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 77.22 |
Mean single sequence MFE | -31.08 |
Consensus MFE | -18.72 |
Energy contribution | -18.25 |
Covariance contribution | -0.47 |
Combinations/Pair | 1.32 |
Mean z-score | -1.49 |
Structure conservation index | 0.60 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.634767 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6232649 104 - 27905053 UUAACGAUUUGG----AUAUGGAGACUGACUACCAGAACUACGUGGAGUCGCUGUCGGGUGUGUCCUCCGACGAGGACGACUUCUCCACGGUGGACAGCUCGGACGAG ............----.....(((.(((.(((((.(.....)((((((.((((....))))(((((((....)))))))....))))))))))).))))))....... ( -33.80) >DroVir_CAF1 5835 95 - 1 ---------AGG----CAAUGGAGACUGAUUACCAAAAUUACGUCGAGUCAUUGUCGGGGGUUUCUUCGGAUGACGAUGAUAUCUCCACGGUGGAUAGUUCUGAUGAG ---------.((----((((((.((((((((.....))))).)))...))))))))((((((.((.(((.....))).)).)))))).((..(((....)))..)).. ( -28.90) >DroGri_CAF1 3001 90 - 1 ------------------AUGGAGACUGAUUACCAAAAUUACGUCGAGUCAUUGUCGGGAGUAUCCUCGGAUGACGAUGACAUCUCCACAGUGGAUAGCUCCGAUGAG ------------------.((((((((((((.....))))).)))((((((((((((.(((....)))...)))))))))).))))))((.((((....)))).)).. ( -28.00) >DroEre_CAF1 5815 90 - 1 ------------------AUGGAGACUGACUACCAGAACUACGUGGAGUCGCUGUCGGGAGUGUCCUCCGACGAGGACGACUUCUCCACGGUGGACAGCUCGGACGAG ------------------...(((.(((.(((((.(.....)(((((((((....)))((((((((((....)))))).))))))))))))))).))))))....... ( -33.70) >DroMoj_CAF1 3029 94 - 1 ----------GG----CAAUGGAGACUGAUUACCAAAAUUACGUGGAGUCAUUGUCGGGAGUAUCCUCAGAUGACGAUGACAUAUCCACGGUGGAUAGUUCUGAUGAG ----------..----((.(((((.(((.(((((........(((((((((((((((.(((....)))...))))))))))...)))))))))).)))))))).)).. ( -30.40) >DroPer_CAF1 6237 108 - 1 UUAGAGUUUGGGGAGGCAAUGGAGACUGAUUAUCAAAAUUAUGUCGAGUCAUUGUCCGGUGUAUCUUCAGAUGACGAUGAUAUGUCCACAGUGGACAGUUCGGACGAG .....(((((((((.(((.((((.(.(((((..((......))...))))).).)))).))).)))))))))..((.(((..(((((.....)))))..)))..)).. ( -31.70) >consensus __________GG____CAAUGGAGACUGAUUACCAAAAUUACGUCGAGUCAUUGUCGGGAGUAUCCUCAGAUGACGAUGACAUCUCCACGGUGGACAGCUCGGACGAG .....................(((.(((...................((((((((((.(((....)))...))))))))))...(((.....)))))))))....... (-18.72 = -18.25 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:06 2006