Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,231,759 – 6,231,868 |
Length | 109 |
Max. P | 0.825927 |
Location | 6,231,759 – 6,231,868 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 81.11 |
Mean single sequence MFE | -29.17 |
Consensus MFE | -21.85 |
Energy contribution | -22.02 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.19 |
Mean z-score | -1.83 |
Structure conservation index | 0.75 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.825927 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6231759 109 + 27905053 CAUGAUCGUCAAAGAGGCGACGCGAGAAAAAGUGGCGCAGCCUCUUGUGCGGUUGGAAAAGCCAGAAGUACAGACUUUG-GAGAAAAUUAUUAUUAACCUUAUGA---UAGGA .......(((.(((((((..(((.(.......).)))..)))))))((((..((((.....))))..)))).)))....-.................(((.....---.))). ( -31.30) >DroGri_CAF1 2361 108 + 1 CAUGAUCAUCAAACAGACGACGCGAGAAAAAGUAACGUAGUUUUUUGUGCGGUUGAAACAGCCAAAAGUAAAGCCUGU-AAAGUAGAGAUUGAUUAAC----UGCCUAUUUGG ..((((((((..((((.(.(((((.((((((.((...)).)))))).)))(((((...)))))....))...).))))-........)).))))))..----........... ( -16.60) >DroSec_CAF1 4846 109 + 1 CAUGAUCAUCAAAGAGGCGACGCGAGAAAAAGUGGCGUAGCCUCUUGUGCGGUUGGAACAGCCAGAAGUACAGACUUCG-GAGAAGAUUAUGAUUAACCUUAUGA---UGGGA (((((((.((.(((((((.((((.(.......).)))).)))))))((((..((((.....))))..))))...(....-).)).))))))).....(((.....---.))). ( -37.70) >DroSim_CAF1 7084 109 + 1 CAUGAUCGUCAAAGAGGCGACGCGAGAAAAAGUGGCGUAGCCUCUUGUGCGGUUGGAACAGCCAGAAGUACAGACUUUG-GAGAAAAUUAUGAUUAACCAUAUGA---UGGGA ((((((..((.(((((((.((((.(.......).)))).)))))))((((..((((.....))))..))))........-..))..)))))).....((((...)---))).. ( -34.60) >DroEre_CAF1 4888 103 + 1 UAUGAUCGUCAAAGAGGCGACGCGAGAAGAAGUGGCGCAGCCUCUUGUGUGGUUGGAACAGCCAGAAGUACAGACUUUG-GGGAACGUUAUGAUAAG------GA---UAUAA .(((.((.((((((((((..(((.(.......).)))..)))))(((((((((((...))))))....)))))..))))-).)).))).........------..---..... ( -26.80) >DroYak_CAF1 4977 103 + 1 UAUGAUCGUCAAAGAGGCGACGCGAGAAGAAGUGGCGCAGCCUCUUGUGUGGUUGGAACAGCCAGAGGUACAGACUUUG-GGGAGAGAUAUGAUUAA------UA---UAGGA ..(((((((..(((((((..(((.(.......).)))..)))))))...............((((((.......)))))-)........))))))).------..---..... ( -28.00) >consensus CAUGAUCGUCAAAGAGGCGACGCGAGAAAAAGUGGCGCAGCCUCUUGUGCGGUUGGAACAGCCAGAAGUACAGACUUUG_GAGAAAAUUAUGAUUAAC____UGA___UAGGA ..(((((((..(((((((..(((.(.......).)))..)))))))((((..((((.....))))..))))..................)))))))................. (-21.85 = -22.02 + 0.17)
Location | 6,231,759 – 6,231,868 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 81.11 |
Mean single sequence MFE | -21.77 |
Consensus MFE | -15.94 |
Energy contribution | -15.42 |
Covariance contribution | -0.52 |
Combinations/Pair | 1.29 |
Mean z-score | -1.54 |
Structure conservation index | 0.73 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.717359 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6231759 109 - 27905053 UCCUA---UCAUAAGGUUAAUAAUAAUUUUCUC-CAAAGUCUGUACUUCUGGCUUUUCCAACCGCACAAGAGGCUGCGCCACUUUUUCUCGCGUCGCCUCUUUGACGAUCAUG .(((.---.....))).................-.((((((.........))))))......((((.(((((((.((((...........)))).))))))))).))...... ( -22.90) >DroGri_CAF1 2361 108 - 1 CCAAAUAGGCA----GUUAAUCAAUCUCUACUUU-ACAGGCUUUACUUUUGGCUGUUUCAACCGCACAAAAAACUACGUUACUUUUUCUCGCGUCGUCUGUUUGAUGAUCAUG .(((((((((.----...................-((((.(.........).))))......(((...(((((.........)))))...)))..)))))))))......... ( -16.50) >DroSec_CAF1 4846 109 - 1 UCCCA---UCAUAAGGUUAAUCAUAAUCUUCUC-CGAAGUCUGUACUUCUGGCUGUUCCAACCGCACAAGAGGCUACGCCACUUUUUCUCGCGUCGCCUCUUUGAUGAUCAUG ...((---(((...((((...............-.(((((....))))).((.....))))))....(((((((.((((...........)))).))))))))))))...... ( -27.70) >DroSim_CAF1 7084 109 - 1 UCCCA---UCAUAUGGUUAAUCAUAAUUUUCUC-CAAAGUCUGUACUUCUGGCUGUUCCAACCGCACAAGAGGCUACGCCACUUUUUCUCGCGUCGCCUCUUUGACGAUCAUG .....---...(((((((..............(-((((((....)))).)))...........(((.(((((((.((((...........)))).))))))))).)))))))) ( -22.90) >DroEre_CAF1 4888 103 - 1 UUAUA---UC------CUUAUCAUAACGUUCCC-CAAAGUCUGUACUUCUGGCUGUUCCAACCACACAAGAGGCUGCGCCACUUCUUCUCGCGUCGCCUCUUUGACGAUCAUA .....---..------..........((((..(-((((((....)))).)))...............(((((((.((((...........)))).))))))).))))...... ( -21.10) >DroYak_CAF1 4977 103 - 1 UCCUA---UA------UUAAUCAUAUCUCUCCC-CAAAGUCUGUACCUCUGGCUGUUCCAACCACACAAGAGGCUGCGCCACUUCUUCUCGCGUCGCCUCUUUGACGAUCAUA .....---..------.................-....(((........(((.((...)).)))...(((((((.((((...........)))).))))))).)))....... ( -19.50) >consensus UCCUA___UCA____GUUAAUCAUAAUUUUCUC_CAAAGUCUGUACUUCUGGCUGUUCCAACCGCACAAGAGGCUACGCCACUUUUUCUCGCGUCGCCUCUUUGACGAUCAUG ......................................(((........(((.....))).......(((((((.((((...........)))).))))))).)))....... (-15.94 = -15.42 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:05 2006