Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,229,350 – 6,229,467 |
Length | 117 |
Max. P | 0.547939 |
Location | 6,229,350 – 6,229,467 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 80.03 |
Mean single sequence MFE | -29.63 |
Consensus MFE | -19.28 |
Energy contribution | -18.95 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.30 |
Mean z-score | -1.35 |
Structure conservation index | 0.65 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.547939 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6229350 117 - 27905053 UGCUCAACUCGGAUAUCCGAAAGUCCAAGAUGUUCAUCAGUGAUCUCGACAACAUGGUAGAGUUCCACUUAAAGCGCACACACCACGAGACACUGUGAGCGUAUUUUUCAGUUUGAC ...((((.((((....)))).........(((((((.(((((.(((((......((((...(((........)))......)))))))))))))))))))))..........)))). ( -28.60) >DroPse_CAF1 3272 105 - 1 UGCUCAACUCGGAUAUUAAGAAGUCAAAAUCGUAUAUCUGCGAUCUCGACAACAUGGUGGAGUUUCACCUGAAACGCACACCCCAAGGGACGCUCUGAGCAGCUC------------ ((((((....((((((...((........))..))))))(((.((((........((((..(((((....)))))...))))....)))))))..))))))....------------ ( -30.50) >DroSec_CAF1 2438 117 - 1 UGCUCAAUUCGGAUAUCCGAAAGUCCAAGAUGUUCAUCAGUGAUCUCGACAACAUGGUGGAGUUCCACUUAAAGCGUACACACCACGAGACGCAGUGAGCGUAUUUUUCAGUUUACC .(((((.(((((....))))).......(((....))).(((.(((((.......(((((....)))))......(....)....))))))))..)))))................. ( -29.10) >DroSim_CAF1 4675 117 - 1 UGCUCAACUCGGAUAUCCGAAAGUCCAAGAUGUUCAUCAGUGAUCUCGACAACAUGGUGGAGUUCCACUUAAAGCGCACACACCACGAGACGCUGUGAGCGUAUUUUUCAGUUUACC .(((((....((((((((....).....)))))))..(((((.(((((......(((((..(((........))).....))))))))))))))))))))................. ( -31.40) >DroYak_CAF1 2566 117 - 1 UGCUCAACUCGGACAUCCGAAAGUCCAAGAUGUUCAUCAGUGAUCUCGACAACAUGGUGGAAUUUCACUUGAAACGCACACACCACGAGAUGCUAUGAACUUAUUUUUCAGUUUACC .......((.((((........)))).))..((((((.(((.((((((......(((((...((((....))))......))))))))))))))))))))................. ( -27.70) >DroPer_CAF1 3194 105 - 1 UGCUCAACUCGGAUAUUAAGAAGUCAAAAUCGUAUAUCUGCGAUCUCGACAACAUGGUGGAGUUUCACCUGAAACGCACACCCCAAGGGACGCUCUGAGCAGCUC------------ ((((((....((((((...((........))..))))))(((.((((........((((..(((((....)))))...))))....)))))))..))))))....------------ ( -30.50) >consensus UGCUCAACUCGGAUAUCCGAAAGUCCAAGAUGUUCAUCAGUGAUCUCGACAACAUGGUGGAGUUCCACUUAAAACGCACACACCACGAGACGCUGUGAGCGUAUUUUUCAGUUUACC .(((((....((((........)))).............(((.(((((.......(((((....)))))......(....)....))))))))..)))))................. (-19.28 = -18.95 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:03 2006