Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,228,281 – 6,228,377 |
Length | 96 |
Max. P | 0.659090 |
Location | 6,228,281 – 6,228,377 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 80.68 |
Mean single sequence MFE | -20.40 |
Consensus MFE | -14.29 |
Energy contribution | -14.35 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.17 |
Mean z-score | -1.43 |
Structure conservation index | 0.70 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.659090 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6228281 96 + 27905053 -----AGCAAUAUAUUGUUCCUGAUAAAACAU-ACUUAUUACCCUU-UUUCCAGCUAUCGAAUAUAUUUUCGCCUGUUUAUCAUAAUGGGCGGAAGUUGGUUU -----...((((...((((........)))).-...))))..((..-(((((.......(((......)))(((((((......))))))))))))..))... ( -18.80) >DroSec_CAF1 1444 96 + 1 -----AGUAAUAUAUUGUUCCUGAUAAAAUAU-ACUUAUUACCCUU-UUUCCAGCUAUCGAAUAUAUCUUCGCCUGUUUAUCAUAAUGGGCGGAAGUUGGUUU -----.((((((...((((........)))).-...))))))....-...((((((...((.....))((((((((((......))))))))))))))))... ( -20.60) >DroSim_CAF1 3616 96 + 1 -----AGUAAUAUAUUGUUCCUGAUAAAAUAU-ACUUAUUACCCUU-UUUCCAGCUAUCGAAUAUAUCUUCGCCUGUUUAUCAUAAUGGGCGGAAGUUGGUUU -----.((((((...((((........)))).-...))))))....-...((((((...((.....))((((((((((......))))))))))))))))... ( -20.60) >DroEre_CAF1 1449 96 + 1 -----AAAAAUAUUUGGUUUCUGAUAAAACAU-ACUUAUUAACCUU-UUUCCAGCUAUCGAAUUUAUUUUCGCCUGUUUAUCAUAAUGGGCGGAAGUUGGAUU -----..........(((...((((((.....-..)))))))))..-..(((((((.(((((......)))(((((((......))))))))).))))))).. ( -22.40) >DroYak_CAF1 1507 98 + 1 -----AGUAAUACACUGUUCCUGAUAAAAAAAAGCUCAUUACCCUUUUUUCCAGCUAUCGAAUAUAUCUUCGACUCUUUAUCAUAAUGGGCGGAAGUUGGUUU -----.........((((((.(((((((....((((................)))).(((((......)))))...)))))))....)))))).......... ( -14.59) >DroAna_CAF1 4463 97 + 1 CCGUGAAUAGUAUUAGCUUCACUAGUAACUAA-AGGUAUGGGC-----UUCCAGUUACCGGAUGUACCUGCGCCUGUUCAUCAUAAUGGGCUGCAAUUGGAUU (((((..(((((((((.....))))).)))).-...)))))..-----.(((((((...((.....)).(((((((((......))))))).))))))))).. ( -25.40) >consensus _____AGUAAUAUAUUGUUCCUGAUAAAAUAU_ACUUAUUACCCUU_UUUCCAGCUAUCGAAUAUAUCUUCGCCUGUUUAUCAUAAUGGGCGGAAGUUGGUUU ..................................................((((((...((.....))((((((((((......))))))))))))))))... (-14.29 = -14.35 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:02 2006