Locus 2166

Sequence ID 3R_DroMel_CAF1
Location 6,219,759 – 6,219,867
Length 108
Max. P 0.535513
window3526

overview

Window 6

Location 6,219,759 – 6,219,867
Length 108
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 84.49
Mean single sequence MFE -29.88
Consensus MFE -21.31
Energy contribution -22.82
Covariance contribution 1.51
Combinations/Pair 1.20
Mean z-score -2.05
Structure conservation index 0.71
SVM decision value 0.00
SVM RNA-class probability 0.535513
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6219759 108 + 27905053
-UUGGACACGAUGUAGGCAUUGUUAUGCUCUUAGCAUCGGCAAAAGAUUCAUGAAUCACUUGCGUUCGAAUGAGAAUGAGUCAACAUUGAAUGACAUUUGCUGUUGAUU
-((((((.((((((((((((....)))).))..))))))((((..((((....))))..)))))))))).........((((((((..((((...))))..)))))))) ( -30.30)
>DroSec_CAF1 37034 108 + 1
-UUGGACACGAUGUAGGCAUUGUUAUGCUCUUAGCAUCGGCAAAAGAUUCAUGAAUCACUUGCGUUCGACUGAGAAUGAGUCAACAGUGAAUAACAUUUGCUGUUGAUU
-((((((.((((((((((((....)))).))..))))))((((..((((....))))..)))))))))).........(((((((((..(((...)))..))))))))) ( -36.60)
>DroSim_CAF1 36973 108 + 1
-UUGGACACGAUGUAGGCAUUGUUAUGCUCUUAGCAUCGGCAAAAGAUUCAUGAAUCACUUGCGUUCGAAUGAGAAUGAGUCAACAGUGAAUAACAUUUGCUAUUGAUU
-((((((.((((((((((((....)))).))..))))))((((..((((....))))..)))))))))).........((((((.((..(((...)))..)).)))))) ( -30.90)
>DroEre_CAF1 37324 102 + 1
-UUGGACACGAUGUAGGCAUUGUUAUGCUCUUAGCAUCGGCAAAAGUUUUAUGAAUCACUUGUGCUCGAA------UGAGUCAACAGUGAAUGACAUUUUCUGUUGAUU
-((((...((((((((((((....)))).))..))))))(((.((((..........)))).))))))).------..(((((((((.((((...)))).))))))))) ( -25.70)
>DroYak_CAF1 34348 108 + 1
-UUGGACACGAUGUAGGCAUUGUUAUGCUCUUAGCAUCGCCGAAAGUUUCAUGAAUCACUUGUGCUCGAAUGAGAAUGAGUCAACAGUGAAUGACAUAUGCUGUUGAUU
-((((...((((((((((((....)))).))..)))))))))).....((((...(((.(((....))).)))..))))(((((((((...........))))))))). ( -28.90)
>DroAna_CAF1 42259 101 + 1
AUUUGUCUUUCUGUGGGCAUUGUUAUGCUCUUAGCAUCGUCAAAGUUUCCAUGAAUCACCGC--------CGAGUGUGAGUCAACAGGGAGUGACACUCUCCGUUGAUU
.((((.(..((((.((((((....)))))).))).)..).)))).........(((((.((.--------.((((((.(.((......)).).))))))..)).))))) ( -26.90)
>consensus
_UUGGACACGAUGUAGGCAUUGUUAUGCUCUUAGCAUCGGCAAAAGAUUCAUGAAUCACUUGCGUUCGAAUGAGAAUGAGUCAACAGUGAAUGACAUUUGCUGUUGAUU
........((((((((((((....)))).))..)))))).........((((...(((.(((....))).)))..))))(((((((((((((...))))))))))))). (-21.31 = -22.82 +   1.51)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:55 2006