Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,215,605 – 6,215,700 |
Length | 95 |
Max. P | 0.954560 |
Location | 6,215,605 – 6,215,700 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 93.54 |
Mean single sequence MFE | -30.55 |
Consensus MFE | -26.89 |
Energy contribution | -27.12 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -1.96 |
Structure conservation index | 0.88 |
SVM decision value | 1.44 |
SVM RNA-class probability | 0.954560 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6215605 95 + 27905053 UGGGA--UGUGUGGGCCGCGUAUUUUUAGCCGUCGAGCUAGAAAGC-GUUUUGCAUUUGCAAAACAAACGCGAAAAUCGGGCGAAGAAAACGUGGGCA .....--......(.((((((.(((((.(((..((((((....)))-(((((((....)))))))...........)))))).))))).)))))).). ( -32.10) >DroSec_CAF1 32802 95 + 1 UGGGU--UGUGUGGGCCGCGUAUUUUUAGCCGUCGAGCUAGAAAGC-GUUUUGCAUUUGCAAAACAAACGCGAAAAUCGGGCGAAGAAAACGUGGGCA .....--......(.((((((.(((((.(((..((((((....)))-(((((((....)))))))...........)))))).))))).)))))).). ( -32.10) >DroSim_CAF1 32762 95 + 1 UGGGU--UGUGUGGGCCGCGUAUUUUUAGCCGUCGAGCUAGAAAGC-GUUUUGCAUUUGCAAAACAAACGCGAAAAUCGGGCGAAGAAAACGUGGGCA .....--......(.((((((.(((((.(((..((((((....)))-(((((((....)))))))...........)))))).))))).)))))).). ( -32.10) >DroEre_CAF1 33026 95 + 1 UAAGU--UGUGUGGGCCGCGUAUUUUUAGCCGUCGAGCUAGAAAGC-GUUUUGCAUUUGCAAAACAAACGCGAAAAUCGGGCAAAGAAAACGUGGGCA .....--......(.((((((.(((((.(((..((((((....)))-(((((((....)))))))...........)))))).))))).)))))).). ( -32.10) >DroYak_CAF1 30044 95 + 1 UGGGU--UGUGUGGGCCGCGUAUUUUUAGACGUCGAGCUAGAAAGC-AUUUUGCAUUUGCAAAACAAACGCGAAAAUCGGGCAAAGAAAACGUGGGCA .....--......(.((((((.(((((.(.(.(((((((....)))-.((((((.((((.....)))).)))))).)))))).))))).)))))).). ( -25.80) >DroAna_CAF1 38777 98 + 1 UGGAUCAUGUGUGGGCCGCGUAUUUUUAGCCGCCGAGCUAGAUAGCCGUCCUGCAUUUGCCAAACAAACGCGAGAAUCGGGCGCAGAAAACGUGGGCC ............((.((((((.(((((.(((.(((((((....)))..((.(((.((((.....)))).))).)).))))).))))))))))))).)) ( -29.10) >consensus UGGGU__UGUGUGGGCCGCGUAUUUUUAGCCGUCGAGCUAGAAAGC_GUUUUGCAUUUGCAAAACAAACGCGAAAAUCGGGCGAAGAAAACGUGGGCA .............(.((((((.(((((.(((..((((((....)))..((((((.((((.....)))).)))))).)))))).))))).)))))).). (-26.89 = -27.12 + 0.22)
Location | 6,215,605 – 6,215,700 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 93.54 |
Mean single sequence MFE | -23.44 |
Consensus MFE | -20.94 |
Energy contribution | -20.69 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.08 |
Mean z-score | -1.55 |
Structure conservation index | 0.89 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.879865 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6215605 95 - 27905053 UGCCCACGUUUUCUUCGCCCGAUUUUCGCGUUUGUUUUGCAAAUGCAAAAC-GCUUUCUAGCUCGACGGCUAAAAAUACGCGGCCCACACA--UCCCA .(((..(((.((.((.((((((.....(((((((.....))))))).....-(((....))))))..))).)).)).))).))).......--..... ( -22.60) >DroSec_CAF1 32802 95 - 1 UGCCCACGUUUUCUUCGCCCGAUUUUCGCGUUUGUUUUGCAAAUGCAAAAC-GCUUUCUAGCUCGACGGCUAAAAAUACGCGGCCCACACA--ACCCA .(((..(((.((.((.((((((.....(((((((.....))))))).....-(((....))))))..))).)).)).))).))).......--..... ( -22.60) >DroSim_CAF1 32762 95 - 1 UGCCCACGUUUUCUUCGCCCGAUUUUCGCGUUUGUUUUGCAAAUGCAAAAC-GCUUUCUAGCUCGACGGCUAAAAAUACGCGGCCCACACA--ACCCA .(((..(((.((.((.((((((.....(((((((.....))))))).....-(((....))))))..))).)).)).))).))).......--..... ( -22.60) >DroEre_CAF1 33026 95 - 1 UGCCCACGUUUUCUUUGCCCGAUUUUCGCGUUUGUUUUGCAAAUGCAAAAC-GCUUUCUAGCUCGACGGCUAAAAAUACGCGGCCCACACA--ACUUA .(((..(((.......((((((.....(((((((.....))))))).....-(((....))))))..))).......))).))).......--..... ( -22.94) >DroYak_CAF1 30044 95 - 1 UGCCCACGUUUUCUUUGCCCGAUUUUCGCGUUUGUUUUGCAAAUGCAAAAU-GCUUUCUAGCUCGACGUCUAAAAAUACGCGGCCCACACA--ACCCA ................((((((((((.(((((.(((((((....)))))))-(((....)))..)))))...))))).)).))).......--..... ( -19.50) >DroAna_CAF1 38777 98 - 1 GGCCCACGUUUUCUGCGCCCGAUUCUCGCGUUUGUUUGGCAAAUGCAGGACGGCUAUCUAGCUCGGCGGCUAAAAAUACGCGGCCCACACAUGAUCCA (((((..(((((..(((((((.((((.(((((((.....)))))))))))))(((....)))..))).))..)))))..).))))............. ( -30.40) >consensus UGCCCACGUUUUCUUCGCCCGAUUUUCGCGUUUGUUUUGCAAAUGCAAAAC_GCUUUCUAGCUCGACGGCUAAAAAUACGCGGCCCACACA__ACCCA .(((..(((.......((((((((((.(((((((.....)))))))))))..(((....))))))..))).......))).))).............. (-20.94 = -20.69 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:54 2006