Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,212,417 – 6,212,522 |
Length | 105 |
Max. P | 0.734100 |
Location | 6,212,417 – 6,212,522 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 77.04 |
Mean single sequence MFE | -17.12 |
Consensus MFE | -13.00 |
Energy contribution | -12.84 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.20 |
Mean z-score | -1.33 |
Structure conservation index | 0.76 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.734100 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6212417 105 + 27905053 AAAUUAAA-CACUUCUUCCAGCAAAACUAUAUAGCAUAUUAGUUCGAGUUAUGGAGCUCGAACUGUUUAAAUCCGAAUCAACCGCAAAACAAAAACAACAGCGUUU ...(((((-(..........((...........)).....((((((((((....))))))))))))))))............(((...............)))... ( -18.36) >DroSec_CAF1 29078 106 + 1 AAAUUAAAAUUCCUUUGAAAAAAGAAAUCGUUGGUAUAUUAGUUCAUGUUAUGGAGCUCGAACUGUUUAAAUCCGAAUCAACUGCAAAACAAAAACAACAGUGUUU ............((((....))))......((((.....((((((..(((....)))..)))))).......))))....((((..............)))).... ( -13.14) >DroSim_CAF1 29544 105 + 1 AAAUUAAA-CCCUUUUUCCAGCAAAACUAUUUAGCAUAUUAGUUCGAGUUAUGGAGCUCGAACUGUUUAAAUCCGAAUAAACUACAAAACACAAACAACAGCGUUU ........-........................((.....((((((((((....))))))))))(((((........)))))..................)).... ( -16.80) >DroEre_CAF1 29856 79 + 1 AAAUA---------------------------AAAAUAUUAGUUCGAGCUAUGGAGCUCGGACUGUAUGAGUCCGAAUCAACUGCAAAACACGAACAACAGCGUUU .....---------------------------.........(((((.(((....)))(((((((.....)))))))...............))))).......... ( -19.00) >DroYak_CAF1 26830 105 + 1 AAAGCAAA-CAUUUCUUCGAGCAAAACUAUUUAGCAUAUUAGUUCGAGUUAUGGAGCUCGGACUGUAUAAAUCCGAAUCAACUGCAAAACACAAACAACAGCGUUU ...(((..-...(((.....((...........))((((.((((((((((....))))))))))))))......))).....))).((((.(........).)))) ( -18.30) >consensus AAAUUAAA_CACUUCUUCCAGCAAAACUAUUUAGCAUAUUAGUUCGAGUUAUGGAGCUCGAACUGUUUAAAUCCGAAUCAACUGCAAAACACAAACAACAGCGUUU .......................................(((((((((((....)))))))))))...........................((((......)))) (-13.00 = -12.84 + -0.16)
Location | 6,212,417 – 6,212,522 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 77.04 |
Mean single sequence MFE | -20.54 |
Consensus MFE | -16.00 |
Energy contribution | -15.52 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.21 |
Mean z-score | -0.99 |
Structure conservation index | 0.78 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.508932 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6212417 105 - 27905053 AAACGCUGUUGUUUUUGUUUUGCGGUUGAUUCGGAUUUAAACAGUUCGAGCUCCAUAACUCGAACUAAUAUGCUAUAUAGUUUUGCUGGAAGAAGUG-UUUAAUUU (((((((.((((.........))))....(((((....((((((((((((........)))))))).((((...)))).))))..)))))...))))-)))..... ( -19.80) >DroSec_CAF1 29078 106 - 1 AAACACUGUUGUUUUUGUUUUGCAGUUGAUUCGGAUUUAAACAGUUCGAGCUCCAUAACAUGAACUAAUAUACCAACGAUUUCUUUUUUCAAAGGAAUUUUAAUUU ......((((((((.((((.((.(((....(((((((.....)))))))))).)).)))).)))).)))).......(((((((((....)))))))))....... ( -17.70) >DroSim_CAF1 29544 105 - 1 AAACGCUGUUGUUUGUGUUUUGUAGUUUAUUCGGAUUUAAACAGUUCGAGCUCCAUAACUCGAACUAAUAUGCUAAAUAGUUUUGCUGGAAAAAGGG-UUUAAUUU ((((((........)))))).((((((((........)))))((((((((........))))))))....)))(((((..((((......))))..)-)))).... ( -20.40) >DroEre_CAF1 29856 79 - 1 AAACGCUGUUGUUCGUGUUUUGCAGUUGAUUCGGACUCAUACAGUCCGAGCUCCAUAGCUCGAACUAAUAUUUU---------------------------UAUUU ......(((((((((.(((.((.(((....(((((((.....)))))))))).)).))).))))).))))....---------------------------..... ( -21.90) >DroYak_CAF1 26830 105 - 1 AAACGCUGUUGUUUGUGUUUUGCAGUUGAUUCGGAUUUAUACAGUCCGAGCUCCAUAACUCGAACUAAUAUGCUAAAUAGUUUUGCUCGAAGAAAUG-UUUGCUUU ....(((((((((((.(((.((.(((....(((((((.....)))))))))).)).))).))))).)))).))((((((.((((......)))).))-)))).... ( -22.90) >consensus AAACGCUGUUGUUUGUGUUUUGCAGUUGAUUCGGAUUUAAACAGUUCGAGCUCCAUAACUCGAACUAAUAUGCUAAAUAGUUUUGCUGGAAAAAGUG_UUUAAUUU ......(((((((((.(((.((.(((....(((((((.....)))))))))).)).))).))))).)))).................................... (-16.00 = -15.52 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:52 2006