Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,211,827 – 6,211,924 |
Length | 97 |
Max. P | 0.659277 |
Location | 6,211,827 – 6,211,924 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 81.55 |
Mean single sequence MFE | -36.55 |
Consensus MFE | -27.93 |
Energy contribution | -28.48 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.07 |
Mean z-score | -1.44 |
Structure conservation index | 0.76 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.659277 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6211827 97 + 27905053 UUUU--------UGUGCCUUUGCACGUGCCCUGC---AAGCA---ACCAACCGGUCGUAUGUGUAACAUCCG-----AACGGGGCGUAUACAUAACGCCGUACAAGGCGACACCAG ....--------(((((((((((...(((...))---).)))---......(((.((((((((((...(((.-----...)))...))))))).))))))...))))).))).... ( -28.70) >DroSec_CAF1 28575 103 + 1 UUUU--------UGCGCCUUUGCACGUGCCCUGCUGCUACCAACCACCAACCGGGCGUAUGUGUAACAUCCG-----AACGGGGCGUAUACGUAACGCCGUGCAAGGCGACACCAG ....--------((((((((.((((((((......)).)).............((((((((((((...(((.-----...)))...))))))).))))))))))))))).)).... ( -37.00) >DroSim_CAF1 28983 103 + 1 UUUU--------UGUGCCUUUGCACGUGCCCUGCUGCUAGCAACCACCAACCGGGCGUAUGUGUAACAUCCG-----AACGGGGCGUAUACGUAACGCCGUGCAAGGCGACACCAG ....--------((((((((.(((((((...(((.....)))..)))......((((((((((((...(((.-----...)))...))))))).)))))))))))))).))).... ( -39.10) >DroEre_CAF1 29349 93 + 1 UUUU--------CGUGCCUGUGCACGUGCCCUCCAGC---CA-------ACCGGGCGUAUGUGUAACAUGCG-----AACGGGGCGUAUACGUAACGCCGUGCAAGGCGCCGCCAG ....--------.((((((.((((((.((......))---).-------.(((..((((((.....))))))-----..)))(((((.......))))))))))))))))...... ( -40.60) >DroYak_CAF1 26318 97 + 1 UUUU--------UGUGCCUGUGCACGUGCCCUCCAGC---CA---ACCAACCGGGCGUAUGUGUAACAUCCG-----AACGGGGCGUAUACGUAACGCCGUGCAAGGCGACACCAG ....--------(((((((.((((((.((......))---).---........((((((((((((...(((.-----...)))...))))))).)))))))))))))).))).... ( -35.60) >DroAna_CAF1 35121 110 + 1 UUUUCGAGCCUCUGUGCCUUUUCACGUGCCCUCAACA---GG---GCCCACGGGGCGUAUGUGUAAUAUCCGCUCGAAUCGGGGCGUAUACGUAACGUCGUGCAAUGCGAUGCCCG ..(((((((...(((.......((((((((((....)---))---((((...)))))))))))..)))...))))))).(((((((....)))..((((((.....)))))))))) ( -38.30) >consensus UUUU________UGUGCCUUUGCACGUGCCCUCCAGC___CA___ACCAACCGGGCGUAUGUGUAACAUCCG_____AACGGGGCGUAUACGUAACGCCGUGCAAGGCGACACCAG ..............(((((.((((((.((((.....................)))).((((((((...((((.......))))...))))))))....)))))))))))....... (-27.93 = -28.48 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:50 2006