Locus 2162

Sequence ID 3R_DroMel_CAF1
Location 6,205,760 – 6,205,869
Length 109
Max. P 0.571272
window3520

overview

Window 0

Location 6,205,760 – 6,205,869
Length 109
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 80.95
Mean single sequence MFE -22.42
Consensus MFE -9.14
Energy contribution -9.42
Covariance contribution 0.28
Combinations/Pair 1.13
Mean z-score -2.20
Structure conservation index 0.41
SVM decision value 0.08
SVM RNA-class probability 0.571272
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6205760 109 + 27905053
CAGCAAAGUCAGCCAAA-CACACAGUUGAACUUCAUUGGUGGUCAGUUCCUGUAUAUGGACUACUUAAAAAACAACCCUUGGGUUAUCUGAAAAUGUA-UUUUUCCCUUUC
(((..((((((((....-......)))).))))..)))((((((.((........)).)))))).........((((....))))....(((((....-.)))))...... ( -17.60)
>DroSec_CAF1 26113 99 + 1
CAACAAAGUCAGCCAAACCACACAGUUGAACUUCAAUGGUGG------------UAUGAACUACUUAAAAAAUAACCCUUGGGUUAUCUGAAAAUUUAAUUUUUCACUUUC
.....((((.((.((.(((((...((((.....)))).))))------------).))..)))))).....((((((....)))))).((((((......))))))..... ( -21.90)
>DroSim_CAF1 26524 99 + 1
CAACAAAGUCAGCCAAACCACACAGUUGAACUUCAAUGGUGG------------UAUGAACUACUUAAAAAACAACCCUUGGGUUAUCUGAAAAUUUAAUUUUUCACUUUC
.....((((.((.((.(((((...((((.....)))).))))------------).))..)))))).......((((....))))...((((((......))))))..... ( -20.10)
>DroEre_CAF1 26886 107 + 1
CGACAAAGUCAGCCAAA-CACUCGGUUGAACUUCAGUGGUGUUUGGUUUCUUUGUAUUAACCACUUGAAAAACAGCCCU--GGUUAGCUGAAAAUGUA-UUCUUCAUUUUC
..((((((..(((((((-((((...(((.....))).))))))))))).)))))).(((((((.(((.....)))...)--))))))..(((((((..-.....))))))) ( -29.00)
>DroYak_CAF1 23545 109 + 1
CAACAAAGUCAGCCAAA-CACACAGUUGAACUUCAGUGGUGUUUGGGUUCUUUGUGUUAACUACUUAAAAAACAACCCCUGGGUUAUCUCAAAAUUAA-UAUUUUAUUUUC
..((((((..(.(((((-(((.((.(((.....))))))))))))).).))))))..................((((....)))).............-............ ( -23.50)
>consensus
CAACAAAGUCAGCCAAA_CACACAGUUGAACUUCAAUGGUGGU__G_U_CU_U_UAUGAACUACUUAAAAAACAACCCUUGGGUUAUCUGAAAAUUUA_UUUUUCACUUUC
........((((........(((.((((.....)))).)))................................((((....))))..)))).................... ( -9.14 =  -9.42 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:49 2006