Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 881,908 – 882,028 |
Length | 120 |
Max. P | 0.573331 |
Location | 881,908 – 882,028 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 99.44 |
Mean single sequence MFE | -38.43 |
Consensus MFE | -38.43 |
Energy contribution | -38.43 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.39 |
Structure conservation index | 1.00 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.573331 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 881908 120 + 27905053 AGGUAGCGAAAAAGAGAGUGUCGCGCGUAUCUGUCGGAUGCAGAUAUAUGGACGCGUAUAGAUACGCAGAUGCGAUAGCGGCUUUGUUUCGAGCUUAGGCUGCAUUAUCAAUCACCUGUG ((((.((((...........))))((((((((((((..(.((......)).)..)).)))))))))).(((..(((((((((((.((.....))..)))))))..)))).)))))))... ( -38.70) >DroSec_CAF1 49946 120 + 1 AGGUAGCGAAAAAGAGAGUGUCGCGCGUAUCUGUCGGAUGCAGAUAUAUGGACGCGUAUAGAUACGCAGAUGCGAUAGCGGCUUUGUCUCGAGCUUAGGCUGCAUUAUCAAUCACCUGUG ((((.((((...........))))((((((((((((..(.((......)).)..)).)))))))))).(((..(((((((((((.((.....))..)))))))..)))).)))))))... ( -38.30) >DroSim_CAF1 49149 120 + 1 AGGUAGCGAAAAAGAGAGUGUCGCGCGUAUCUGUCGGAUGCAGAUAUAUGGACGCGUAUAGAUACGCAGAUGCGAUAGCGGCUUUGUCUCGAGCUUAGGCUGCAUUAUCAAUCACCUGUG ((((.((((...........))))((((((((((((..(.((......)).)..)).)))))))))).(((..(((((((((((.((.....))..)))))))..)))).)))))))... ( -38.30) >consensus AGGUAGCGAAAAAGAGAGUGUCGCGCGUAUCUGUCGGAUGCAGAUAUAUGGACGCGUAUAGAUACGCAGAUGCGAUAGCGGCUUUGUCUCGAGCUUAGGCUGCAUUAUCAAUCACCUGUG ((((.((((...........))))((((((((((((..(.((......)).)..)).)))))))))).(((..(((((((((((.((.....))..)))))))..)))).)))))))... (-38.43 = -38.43 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:52 2006