Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,191,618 – 6,191,716 |
Length | 98 |
Max. P | 0.865821 |
Location | 6,191,618 – 6,191,716 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 78.13 |
Mean single sequence MFE | -38.88 |
Consensus MFE | -23.50 |
Energy contribution | -24.64 |
Covariance contribution | 1.14 |
Combinations/Pair | 1.08 |
Mean z-score | -1.91 |
Structure conservation index | 0.60 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.865821 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6191618 98 - 27905053 CUUUGCCCUUGCCAAUUUCAGGACGUAUCCGUUCUGCCCAGUGGGGGACUACCAGGGCAACGGCCAGACGGCGUACUACUCGACC---------ACGGGUCAGUACG ....(((((.(((......((((((....))))))((((.((((....))))..))))...))).))..)))((((((((((...---------.))))).))))). ( -41.80) >DroPse_CAF1 16999 96 - 1 CCAUCC-CGUUCCA----CAGGACAUAUCCGUUCUGCCCGGUGGCCGACUACCAGGGCAAUGGUCAGAC---AUACUACUCGACCGC---GUCGACGGGCCAGUAUG ....((-(((.(.(----((((((......)))))(((((((((....))))).))))...((((((..---......)).))))..---)).))))))........ ( -32.00) >DroSec_CAF1 12295 98 - 1 CUUUGCCCUUGCCAAUUUCAGGACGUAUUCGUUCUGCCCGGUGGGGGACUACCAGGGCAACGGCCAGACGGCGUACUACUCGACC---------ACGGGUCAGUACG ....(((((.(((......((((((....))))))(((((((((....))))).))))...))).))..)))((((((((((...---------.))))).))))). ( -46.30) >DroSim_CAF1 12299 98 - 1 CUUUGCCCUUGCCAAUUUCAGGACGUAUCCGUUCUGCCCGGUGGGGGACUACCAGGGCAACGGCCAGACGGCGUACUACUCGACC---------GCGGGUCAGUACG ....(((((.(((......((((((....))))))(((((((((....))))).))))...))).))..)))((((((((((...---------.))))).))))). ( -46.00) >DroMoj_CAF1 7583 101 - 1 CGUUUCGCCUGCCCA---CAGGACAUAUCCGUUCUGCCCGGUGGGCGACUACCAGAGCAAUGGCCAGAC---GUAUUACUCCACCACGGCGGCGACGGGCAAUUACA .........(((((.---..(((....)))((((((((.((((((((.((.(((......)))..)).)---))......)))))..))))).))))))))...... ( -34.00) >DroAna_CAF1 19728 91 - 1 GUAUCCCC-------UCCCAGGACCUAUCCGUUCUGCCCGGUGGGCGAUUACCAGGGCACCGGCCAGACGGCCUACUACUCGACC---------ACGGGGCAGUAUG ...(((..-------.....)))......(((.((((((.((((.(((......((...))((((....))))......))).))---------)).)))))).))) ( -33.20) >consensus CUUUGCCCUUGCCAAUUUCAGGACGUAUCCGUUCUGCCCGGUGGGCGACUACCAGGGCAACGGCCAGACGGCGUACUACUCGACC_________ACGGGUCAGUACG ..........(((......(((((......)))))(((((((((....))))).))))...)))........(((((.((((.............))))..))))). (-23.50 = -24.64 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:45 2006