Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,190,163 – 6,190,261 |
Length | 98 |
Max. P | 0.933493 |
Location | 6,190,163 – 6,190,261 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 78.22 |
Mean single sequence MFE | -28.22 |
Consensus MFE | -18.51 |
Energy contribution | -19.27 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.23 |
Mean z-score | -2.02 |
Structure conservation index | 0.66 |
SVM decision value | 1.23 |
SVM RNA-class probability | 0.933493 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6190163 98 - 27905053 GAGCAAGACGAAACUGUAUCUGUUGUGCCACUGCGCAGAAGUGCAGAAGUUCGUGCGAGAGGUGGGUGGAGCGGCCACCAAUGGUAGCCAAUAGAUAG ................(((((((((.((..((((((....)))))).......(((.(..(((((.((...)).)))))..).)))))))))))))). ( -32.90) >DroPse_CAF1 15633 85 - 1 GAGCAAGACAAAGCUGUAUCUGUUGUGCCACUGCGCAGAAGUGCAAAAGUUCGUACGCGAGGUGGGUGCAAUGGACG-----G----AGAAAAG---- .(((........)))...(((((((..((..(((((....)))))..(.((((....)))).).))..)))))))..-----.----.......---- ( -24.80) >DroGri_CAF1 6109 86 - 1 GAGCAAGACGAAACUGUAUCUGUUGUGCCACUGCGCAGAAGUGCAAAAGUUUGUGCGCGAGGUAAGUUCGAUAGAUUCCCC--------AAAAG---- .................((((((((((((..((((((.(((........))).)))))).))))....)))))))).....--------.....---- ( -19.60) >DroEre_CAF1 11163 93 - 1 GAGCAAGACGAAGCUGUAUCUGUUGUGCCACUGCGCAGAAGUGCAGAAGUUCGUGCGAGAGGUGGGUGCAGCGG-----AUUGGUGGCCAAUAGAUGG .(((........))).(((((((((.((((((((((....))))...((((((((((.........)))).)))-----)))))))))))))))))). ( -34.70) >DroMoj_CAF1 6228 86 - 1 GAGCAAGACGAAGCUGUAUCUGUUGUGCCACUGCGCAGAAGUGCAAAAGUUUGUGCGCGAGGUGAGUACAGUGGAUGCCGA--------GAAUA---- .(((........)))(((((..(((((((((((((((.(((........))).)))))..)))).))))))..)))))...--------.....---- ( -31.90) >DroPer_CAF1 15613 85 - 1 GAGCAAGACAAAGCUGUAUCUGUUGUGCCACUGCGCAGAAGUGCAAAAGUUCGUACGCGAGGUGGGUGCAAUGGACG-----G----ACAAAAG---- .(((........)))((.(((((((..((..(((((....)))))..(.((((....)))).).))..)))))))..-----.----)).....---- ( -25.40) >consensus GAGCAAGACGAAGCUGUAUCUGUUGUGCCACUGCGCAGAAGUGCAAAAGUUCGUGCGCGAGGUGGGUGCAAUGGACG_____G_____CAAAAG____ .(((........)))...((((((((((((((((((((((.(.....).))).)))))..)))).))))))))))....................... (-18.51 = -19.27 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:44 2006