Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,178,108 – 6,178,198 |
Length | 90 |
Max. P | 0.810279 |
Location | 6,178,108 – 6,178,198 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 82.23 |
Mean single sequence MFE | -33.27 |
Consensus MFE | -26.75 |
Energy contribution | -27.12 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.17 |
Mean z-score | -1.78 |
Structure conservation index | 0.80 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.810279 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6178108 90 - 27905053 AUGUGUAUGGGUGUGUGUGCGCUGGGGCCGUGAGAAAAUCUAUGCGGCAUACAGCUGGGCGCUCAUAUUC-GGCAGCAGAGCGAAAUGCA----------------G .(((...((((((((.((((((((..((((((((.....)).))))))...))))...)))).)))))))-)...)))..((.....)).----------------. ( -33.40) >DroSec_CAF1 30329 90 - 1 AUGUGUAUGGGUGUGUGUGCGCUGGGGCCGUGAGAAAAUCUAUGCGGCAUACAGCUGGGCGCUCAUAUUC-GGCAGCAGAGCGAAAUGCA----------------G .(((...((((((((.((((((((..((((((((.....)).))))))...))))...)))).)))))))-)...)))..((.....)).----------------. ( -33.40) >DroSim_CAF1 33893 90 - 1 AUGUGUAUGGGUGUGUGUGCGCUGGGGCCGUGAGAAAAUCUAUGCGGCAUACAGCUGGGCGCUCAUAUUC-GGCAGCAGAGCGAAAUGCA----------------G .(((...((((((((.((((((((..((((((((.....)).))))))...))))...)))).)))))))-)...)))..((.....)).----------------. ( -33.40) >DroMoj_CAF1 29935 102 - 1 --GUGUGU--GUGUGUGCGUGUGCGAGCCGUGAGAAAAUCUAUGCGGCAUACAGCUGGGCGCUCAUAUUCAAGCAACAAA-CGAACCACAGCGCGCACUGAGCAGCG --((.(((--..((((((((((((..((...((.....))...)).)))))).((((((.(((........)))..(...-.)..)).))))))))))...))))). ( -32.90) >consensus AUGUGUAUGGGUGUGUGUGCGCUGGGGCCGUGAGAAAAUCUAUGCGGCAUACAGCUGGGCGCUCAUAUUC_GGCAGCAGAGCGAAAUGCA________________G ...((((((((((((.((((((((..((((((((.....)).))))))...))))...)))).)))))))..((......))...)))))................. (-26.75 = -27.12 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:43 2006