Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,176,512 – 6,176,603 |
Length | 91 |
Max. P | 0.733789 |
Location | 6,176,512 – 6,176,603 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 98.35 |
Mean single sequence MFE | -30.16 |
Consensus MFE | -27.76 |
Energy contribution | -27.96 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.38 |
Structure conservation index | 0.92 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.733789 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6176512 91 - 27905053 AACAACACAGCUUUGGAGCGAGCGAGGCGGGGAAUAUUUGGCCGCAGGGGCGAGCGAGAUGGCGAGUGGAACCAAAGUUUCGCCGCCAAAC .........((((((.......)))))).......((((.(((((....))).)).))))((((.(((((((....))))))))))).... ( -30.60) >DroSec_CAF1 28731 91 - 1 AACAACAAAGCUUUGGAGCGAGCGAGGCGGGGAAUAUUUGGCCGCAGGGGCGAGCGAGAUGGCGAGUGGAACCAAAGUUUCGCCGCCAAAC .........((((((.......)))))).......((((.(((((....))).)).))))((((.(((((((....))))))))))).... ( -30.60) >DroSim_CAF1 32317 91 - 1 AACAACAAAGCUUUGGAGCGAGCGAGGCGGGGAAUAUUUGGCCGCAGGGGCGAGCGAGAUGGCGAGUGGAACCAAAGUUUCGCCGCCAAAC .........((((((.......)))))).......((((.(((((....))).)).))))((((.(((((((....))))))))))).... ( -30.60) >DroEre_CAF1 27903 91 - 1 AACAACAAAGCUUUGGAGCGAGCGAGGCGGGGAAUAAUUGGCCGCAGGGGCGAGCGAGAUGGCGAGUGGAACCAAAGUUUCGCCGCCAAAC .........((((((.......)))))).........((.(((((....))).)).)).(((((.(((((((....))))))))))))... ( -29.40) >DroYak_CAF1 28847 91 - 1 AACAACAAAGCUUUGGAGCGAGCGAGGCGGGGAAUACUUGGACGCAGGGGCGAGCGAGAUGGCGAGUGGAACCAAAGUUUCGCCGCCAAAC .........((((((.......))))))........((((..(((....)))..)))).(((((.(((((((....))))))))))))... ( -29.60) >consensus AACAACAAAGCUUUGGAGCGAGCGAGGCGGGGAAUAUUUGGCCGCAGGGGCGAGCGAGAUGGCGAGUGGAACCAAAGUUUCGCCGCCAAAC .........((((((.......)))))).........((.(((((....))).)).)).(((((.(((((((....))))))))))))... (-27.76 = -27.96 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:38 2006