Locus 2154

Sequence ID 3R_DroMel_CAF1
Location 6,166,185 – 6,166,276
Length 91
Max. P 0.783583
window3507

overview

Window 7

Location 6,166,185 – 6,166,276
Length 91
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.23
Mean single sequence MFE -33.50
Consensus MFE -23.00
Energy contribution -22.92
Covariance contribution -0.08
Combinations/Pair 1.17
Mean z-score -1.23
Structure conservation index 0.69
SVM decision value 0.56
SVM RNA-class probability 0.783583
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6166185 91 - 27905053
--------AUCCUAAGAUCUGCGAGCAAAGAUCUGCUCCUUGAAGCGCAGCGCCGCCUGUUUGGCGGAAUUGUGUU---CGACCUUU----------------GGUGCU--GCGUGCUUG
--------............(((((((......)))))......(((((((((((((.....))).((((...)))---).......----------------))))))--))))))... ( -33.90)
>DroSec_CAF1 25392 91 - 1
--------AUCCUAAGAUCUGCGAGCAAAUAUCUGCUCCUUGAAGCGCAGCGCCGCCUGUUUGGCGGAAUUGUGUU---CGACCUUU----------------UGUGCU--GGGUGCUUG
--------....(((((((((((((((......))))).(((((.(((((..(((((.....)))))..)))))))---))).....----------------...)).--)))).)))) ( -30.90)
>DroSim_CAF1 27919 82 - 1
--------AUCCUAAGAUCUGCGAGCAAAUAUCUGCUCCUUGAAGCGCAGCGCCGCCUGUUUGGCGGAAUUGUGU----------------------------UGUGCU--GGGUGCUUG
--------((((.....((...(((((......)))))...))((((((((((((((.....))))).....)))----------------------------))))))--))))..... ( -30.60)
>DroEre_CAF1 25537 91 - 1
--------AUCCUAGGACCUGCGCGCGAAUAUCUGCUCCUUGAAGCGCAGCGCCGCCUGUUUGGCGGAAUUGUGCU---CGGCCUUG----------------GGUGCU--UGUUGCUUC
--------((((.(((.((.....(((......))).....((.((((((..(((((.....)))))..)))))))---)))))).)----------------)))((.--....))... ( -33.60)
>DroYak_CAF1 25689 91 - 1
--------AUCCUAAGACCUGCGCGCGAAUAUCUGCUCCUUAAAGCGCAGCGCCGCCUGUUUGGCGGAAUUGUGUU---CGAUCUUG----------------GGUGCC--UGGUGUUUG
--------.....((.(((.(((((((......))).((.(..(((((((..(((((.....)))))..)))))))---..)....)----------------))))).--.))).)).. ( -29.90)
>DroPer_CAF1 25939 120 - 1
AUAGGAUGAUCCGUCUAUUUGCGAGCAAACACCUGCUCCUUGAAGCGCAAUGCCGACAGCAUGGCGGGAUUGUGCGUGGCGACCUUUCCGCCUUCUUUCGGCGGCUGCUGCUGCUGCUUG
...(((((...)))))....(((((((......))))).....((((((.((((((.((...(((((((..((((...)).))..)))))))..)).))))))..))).)))))...... ( -42.10)
>consensus
________AUCCUAAGAUCUGCGAGCAAAUAUCUGCUCCUUGAAGCGCAGCGCCGCCUGUUUGGCGGAAUUGUGUU___CGACCUUU________________GGUGCU__GGGUGCUUG
....................(((((((......)))))......((((((..(((((.....)))))..))))))...............................))............ (-23.00 = -22.92 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:37 2006