Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,161,278 – 6,161,383 |
Length | 105 |
Max. P | 0.581988 |
Location | 6,161,278 – 6,161,383 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 82.18 |
Mean single sequence MFE | -26.60 |
Consensus MFE | -17.73 |
Energy contribution | -18.40 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.38 |
Mean z-score | -1.66 |
Structure conservation index | 0.67 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.581988 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6161278 105 - 27905053 UCGUUGUCCGAUACAAUAAACGAA------UCGUCGCCAUCAGAUUCUUCUGGGGUAGACUCCUCAGUAUCUUUACUGCCAACGGACUCCCCAUCGAUUGGAAUUUCAUUC .....(((((..............------..((((((.(((((....)))))))).)))....(((((....)))))....)))))...(((.....))).......... ( -25.90) >DroSec_CAF1 23140 105 - 1 UCGUUGUCCGAUACAAUAAACGAA------UCGUCGCCAUCAGAUUCUUCUGGGGUAGACUCCUCAGUAUCCUCACUGCCAACGGACUCCCCAUCGAUUGGAAUUUCAUUC .....(((((..............------..((((((.(((((....)))))))).)))....((((......))))....)))))...(((.....))).......... ( -24.00) >DroSim_CAF1 24492 105 - 1 UCGUUGUCCGAUACAAUAAACGAA------UCGUCGCCAUCAGAUUCUUCUGGGGUAGACUCCUCAGUAUCCUCACUGCCAACGGACUCCCCAUCGAUUGGAAUUUCAUUC .....(((((..............------..((((((.(((((....)))))))).)))....((((......))))....)))))...(((.....))).......... ( -24.00) >DroEre_CAF1 23319 105 - 1 UCAUUGUCAGAGACAAUGAAGGAA------UCGUCGCCCUCAGAUUCUUCUGGGGCAGACUCUUCAGUAUCUUUACUGCCCACGGACUCCCCAUCGAUUGGGAUUUCAUUC ((((((((...)))))))).((..------..(((((((.((((....)))))))).)))....(((((....))))).))..(((.((((........)))).))).... ( -37.10) >DroYak_CAF1 23437 105 - 1 GCAUCGUCAGAGACGAUAAAGGAA------UCGUCGCCUUCGGAUUCUUCUGGGGCAGACUCCUCAGUAUCUUUACUGCCAACGGACUCCCCAUCGAUUGGAAUUUCAUUC .....(((...((((((......)------)))))((((.((((....)))))))).)))....(((((....)))))(((((((........))).)))).......... ( -28.60) >DroMoj_CAF1 23858 108 - 1 UCAUCAUCUGAUACUAUAAACGAGAGUUUUUCAUCGGCACU---AUCUUCUGACUGAUCAUCAGUAGUGUCCUUGCUGCCAACAGAUUCGCCAUCUACUGGGAUUUCAUUU .......(((((.....((((....))))...)))))....---......(((..((((.(((((((((.(....(((....)))....).)).))))))))))))))... ( -20.00) >consensus UCAUUGUCCGAUACAAUAAACGAA______UCGUCGCCAUCAGAUUCUUCUGGGGUAGACUCCUCAGUAUCCUUACUGCCAACGGACUCCCCAUCGAUUGGAAUUUCAUUC .....(((((......................((((((.(((((....)))))))).)))....(((((....)))))....)))))...(((.....))).......... (-17.73 = -18.40 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:35 2006