Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,156,262 – 6,156,355 |
Length | 93 |
Max. P | 0.511417 |
Location | 6,156,262 – 6,156,355 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 67.54 |
Mean single sequence MFE | -18.43 |
Consensus MFE | -4.37 |
Energy contribution | -4.85 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.42 |
Mean z-score | -1.92 |
Structure conservation index | 0.24 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.511417 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6156262 93 - 27905053 UGCUAAU----GUAUUCGCAGACACUAAAACGGUAUUA--U-----------UGCAUUAUUUUCCAUUAGCAUUU-CUACCGGUCUAGUUGCGAAUUUAGUAAAAACAAAU ((((((.----..(((((((...((((...(((((..(--.-----------(((..............))).).-.)))))...)))))))))))))))))......... ( -22.54) >DroSec_CAF1 18010 106 - 1 UGCUAAU----GAAUUCGCAGACACUAAAACGAUAUUGUAUUGAACACUAUUUUUAUUAUUUUUCAUUAGUAUUA-UUACCGGUCUAGUUGCGAAUUCAUUACAAACAAAU ((.((((----((((((((((((.....((..((((((...((((.................)))).))))))..-))....)))....)))))))))))))))....... ( -22.23) >DroSim_CAF1 19339 105 - 1 UGCUAAU----GAAUUCGCAGACACUAAAACGAUAUUGUAUUGAACACUAUUUUUAUUAUUUUUCAUUAGCAUUA--UACCGGUCUAGUUGUGAAUUCAUUACAAACAAAU ((.((((----(((((((((...((((...(((((.(((..((((.................))))...))).))--)..))...)))))))))))))))))))....... ( -20.13) >DroEre_CAF1 18229 80 - 1 UGCUAAA----GAAGUGACAGACACAA-----------------------UUUUU----UUUUUCAUUAGCAUUAUUUACCAGUCUAGCUUUGCAUUUAGUACAAGCUAAU ((((((.----((((.((.(((.....-----------------------))).)----).)))).)))))).............(((((((((.....))).)))))).. ( -13.70) >DroYak_CAF1 18241 85 - 1 UUCUAAAAAAAAAAGUGGCAGGCACUA-----------------------UUUUU---GUGUUUUAUUAGCAUUAUUUACCAGCCGAGUUGUGCAUUUAGUACAAACAUAU ..............(((...(((....-----------------------.....---(((((.....))))).........)))...((((((.....)))))).))).. ( -13.57) >consensus UGCUAAU____GAAUUCGCAGACACUAAAACG_UAUU___U_________UUUUUAUUAUUUUUCAUUAGCAUUA_UUACCGGUCUAGUUGUGAAUUUAGUACAAACAAAU ...........((((((((((((...........................................................)))....)))))))))............. ( -4.37 = -4.85 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:32 2006