| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,125,069 – 6,125,170 |
| Length | 101 |
| Max. P | 0.794785 |
| Location | 6,125,069 – 6,125,170 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 82.48 |
| Mean single sequence MFE | -35.07 |
| Consensus MFE | -24.19 |
| Energy contribution | -25.80 |
| Covariance contribution | 1.61 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.794785 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6125069 101 + 27905053 ---CAUUCAUCCAUUGCGCCCUAUACCUGGCUAUC-UCUCACCUGCUCCUGCACCUCCUCCUCCUUCUAGGUGCGGGGAGCGCUGGCUGAGGGCCUUGGACAUUA ---......((((..(((((........)))....-((((((((((((((((((((............)))))).)))))))..)).)))))))..))))..... ( -36.60) >DroSec_CAF1 37067 101 + 1 ---CAUUCAACCAUUGCGCCCUAUACCUGGCUGUC-UCUCACCUGCUCCUGCACCUCCUCCUGCUUCCAGGUGCGGGGAGCGCUGGUUGAGGGCCUUGGACAUUA ---..((((((((.(((.(((..(((((((..((.-.......(((....))).........))..)))))))..))).))).)))))))).............. ( -38.03) >DroSim_CAF1 38062 101 + 1 ---CAUUCAUCCAUGGCGCCCUCUACCUGGCUGUA-UCUCACCUGCUCCUGCACCUCCUCCUGCUUCCAGGUGCGGGGAGCGCUGGCUGAGGGCCUUGGACAUUA ---......((((.((.((((((..((.(((((..-...))...((((((((((((............)))))).)))))))))))..))))))))))))..... ( -41.20) >DroEre_CAF1 37524 101 + 1 ---CAUUCAUCCAUUCCACCCAAUACCUGGCCGUC-UCUCACCUGCUCCUGCACCUCCUCCUGCUUCCAGGUGCGGGGAGCGCUGGCUGAGGGCCUUGGACAUUA ---......................((.((((.((-..(((.(.((((((((((((............)))))).))))))).)))..)).))))..))...... ( -34.70) >DroYak_CAF1 38253 104 + 1 GUACAUUCAUCCAAUCCGCCCAAUACCUGGCUGUC-UCUCACCUGCUCCUGCACCUCCUCCUGCUUCCAGGUGCGGGGAGCGCUGGCUGAGGGCCUUGGACAUUA .........(((((...(((........))).(.(-((((((((((((((((((((............)))))).)))))))..)).)))))).))))))..... ( -36.20) >DroPer_CAF1 47799 78 + 1 ---C------------AAAAUAAUAUUUGGCUGUUGUCACACCU------------GCUCCUGCUUUCAGGUGCGGGGAGCGCUGGCUGGGGGCCUUGAACAUUA ---.------------............((((.(((((((.(((------------((.((((....)))).)))))....).)))).)).)))).......... ( -23.70) >consensus ___CAUUCAUCCAUUGCGCCCAAUACCUGGCUGUC_UCUCACCUGCUCCUGCACCUCCUCCUGCUUCCAGGUGCGGGGAGCGCUGGCUGAGGGCCUUGGACAUUA .........................((.((((.....(((((((((((((((((((............)))))).)))))))..)).))))))))..))...... (-24.19 = -25.80 + 1.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:28 2006