Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,120,438 – 6,120,535 |
Length | 97 |
Max. P | 0.972152 |
Location | 6,120,438 – 6,120,535 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 76.45 |
Mean single sequence MFE | -23.40 |
Consensus MFE | -13.58 |
Energy contribution | -13.88 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.15 |
Mean z-score | -2.32 |
Structure conservation index | 0.58 |
SVM decision value | 1.69 |
SVM RNA-class probability | 0.972152 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6120438 97 - 27905053 UCAGAUGAAGUUCGGUGA----GUGUGAGCAG-GAGAUUAUAUUC-CAAAAGCCAAAUAUAAUCCAUGCAGCACUCGGCUUGCAA-AACGU-UCACAUACACAUU ..............(((.----((((((((..-(.(((((((((.-.........)))))))))).((((((.....)).)))).-...))-)))))).)))... ( -26.30) >DroVir_CAF1 32710 80 - 1 --------------GUGA----GUGU----AU-CAGAUUAUAUUC-CAAAAGCCAAAUAUAAUCCAUGCAGCACUCCGCUGGCAA-ACGGUUUUACAUACACAUC --------------(((.----((((----(.-..(((((((((.-.........)))))))))..((((((.....))).))).-.......))))).)))... ( -18.20) >DroWil_CAF1 35757 94 - 1 ------GUAGAUAGGUAG----GUAUAUAUAGCCAGAUUAUAUUUUGAAAAGCCAAAUAUAAUCCAUGCAGCACUCGGCUUGCAAUAACGU-UUACAUACACAUU ------((((((.....(----((.......))).((((((((((.(.....).))))))))))..((((((.....)).)))).....))-))))......... ( -18.60) >DroYak_CAF1 33441 97 - 1 UCAGAUGAAGUUCGGUGA----GUGUGAGCAG-GAGAUUAUAUUC-CAAAAGCCAAAUAUAAUCCAUGCAGCACUCGGCUUGCAA-AACGU-UCACAUACACAUU ..............(((.----((((((((..-(.(((((((((.-.........)))))))))).((((((.....)).)))).-...))-)))))).)))... ( -26.30) >DroMoj_CAF1 45065 80 - 1 --------------AGGA----GUGU----GC-CAGAGUAUAUUC-CAAAAGCCAAAUGUAAUCCAUGCAGCACUCUGCUGGCAA-AACGUUUUACAUACACAAC --------------.(((----((((----((-....))))))))-).........((((((..(.((((((.....))).))).-...)..))))))....... ( -20.70) >DroAna_CAF1 28207 101 - 1 UCUGAUGGAGUUCGGUGAGUGAGUGUGAGCAG-GAGAUUAUAUUC-CUAAAGCCAAAUAUAAUCCAUGCGGCACUCGGCUUGCAA-AACGU-UCACAUACACAUC ...((((..(((..(..(((((((((..(((.-(.(((((((((.-.........)))))))))).))).)))))).)))..)..-)))((-......)).)))) ( -30.30) >consensus ______G_AGUUCGGUGA____GUGUGAGCAG_CAGAUUAUAUUC_CAAAAGCCAAAUAUAAUCCAUGCAGCACUCGGCUUGCAA_AACGU_UCACAUACACAUC ......................(((((........(((((((((...........)))))))))..((((((.....))).))).............)))))... (-13.58 = -13.88 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:27 2006