Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,118,557 – 6,118,658 |
Length | 101 |
Max. P | 0.755175 |
Location | 6,118,557 – 6,118,658 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 80.73 |
Mean single sequence MFE | -17.60 |
Consensus MFE | -11.16 |
Energy contribution | -12.35 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.13 |
Mean z-score | -1.93 |
Structure conservation index | 0.63 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.755175 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6118557 101 - 27905053 AAGAUUGUAAUCUAUGAAGUCUUCUGAGAUCUUCAAUUAAACAAUCAAACAACACUUGAAUUUA----------------AUCCCAUAGAUUGCACAUUUGUUAUGUCCGCCCAAAU .(((((((((((((((((((((....))).)))).((((((...((((.......)))).))))----------------))...)))))))))).))))................. ( -16.80) >DroSec_CAF1 30610 101 - 1 AAGAUUGUAAUCUAUGAAGUCUUCUGAUUUCUUAAAUUAAACAAUCAAACAACACUUGAAUUUA----------------AUCCCAUAGAUUACACAUUUGUUAUGUCCGCCCAAAU .((((((((((((((((((((....))))))....((((((...((((.......)))).))))----------------))...)))))))))).))))................. ( -17.20) >DroSim_CAF1 31599 101 - 1 AAGAUUGUAAUCUAUGAAGUCUUCUGAUUUCUUCAAUUAAACAAUCAAACAACACUUGAAUUUA----------------AUCCCAUAGAUUACACAUUUGUUAUGUCCGCCCAAAU .((((((((((((((((((((....))))))....((((((...((((.......)))).))))----------------))...)))))))))).))))................. ( -17.20) >DroEre_CAF1 30946 115 - 1 AUGUUUGUAAU--AAGAAUUCUGCCGAUUCCGUCUGUUAAACAUUCAGACAAUACUUGAAUUUAAAGAUUUAGACCCCAAAUUUCGUAGAUUACACAUGUGCUGUGUCCGCACAAAU .....(((((.--......(((((.((....(((((.........))))).....(((((((....)))))))..........))))))))))))..(((((.......)))))... ( -19.21) >consensus AAGAUUGUAAUCUAUGAAGUCUUCUGAUUUCUUCAAUUAAACAAUCAAACAACACUUGAAUUUA________________AUCCCAUAGAUUACACAUUUGUUAUGUCCGCCCAAAU ......(((((((((((((((....)))))).............((((.......))))..........................)))))))))((((.....)))).......... (-11.16 = -12.35 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:26 2006