Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,115,529 – 6,115,630 |
Length | 101 |
Max. P | 0.987828 |
Location | 6,115,529 – 6,115,630 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 88.46 |
Mean single sequence MFE | -25.12 |
Consensus MFE | -23.42 |
Energy contribution | -23.62 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.89 |
Structure conservation index | 0.93 |
SVM decision value | 2.09 |
SVM RNA-class probability | 0.987828 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6115529 101 - 27905053 GGCUGCAAUUGUAUCUUAAAGAUACGAUUACAUAGAUGCAUAACAAAUGCGCGAGGCACGCGUGCAGCUCCCCCUACCCCCCCCCCCCCCGCAAUCACUUA (((((((((((((((.....)))))))))...................(((((.....)))))))))))................................ ( -24.70) >DroSec_CAF1 27611 93 - 1 GGCUGCAAUUGUAUCUUAAAGAUACGAUUACACAGAUGCAUAACAAACGCGCGAGGCACGCGUGCAGCUCCCCCAGCC--------CCCCGCAUCCACUUA ...((.(((((((((.....))))))))).))..(((((........((((((.....))))))..(((.....))).--------....)))))...... ( -25.80) >DroSim_CAF1 28252 93 - 1 GGCUGCAAUUGUAUCUUAAAGAUACGAUUACACAGAUGCAUAACAAAUGCGCGAGGCACGCGUGCAGCUCCCCCUGCA--------CCCCGCAUCCACUUU ((.((((((((((((.....)))))))))........((((.....))))(((.....)))((((((......)))))--------)...))).))..... ( -29.10) >DroEre_CAF1 27996 93 - 1 GGCUGCAAUUGUAUCUUAAAGAUACGAUUACACAGAUGCAUAACAAAUGCGCGAGGCACGCGUGCACCUCUCCCUGUC--------CCGCUUAUUCCCUUA (((.(.(((((((((.....))))))))).)((((..((((.....))))..((((((....)))..)))...)))).--------..))).......... ( -21.30) >DroYak_CAF1 28586 93 - 1 GGCUGCAAUUGUAUCUUAAAGAUACGAUUACACAGAUGCAUAACAAAUGCGCGAGGCACGCGUGCAGCUCCCCCUGCC--------CCUCUCAUGAUCUUG (((((((((((((((.....)))))))))...................(((((.....))))))))))).........--------............... ( -24.70) >consensus GGCUGCAAUUGUAUCUUAAAGAUACGAUUACACAGAUGCAUAACAAAUGCGCGAGGCACGCGUGCAGCUCCCCCUGCC________CCCCGCAUCCACUUA (((((((((((((((.....)))))))))...................(((((.....)))))))))))................................ (-23.42 = -23.62 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:23 2006