Locus 2140

Sequence ID 3R_DroMel_CAF1
Location 6,113,712 – 6,113,806
Length 94
Max. P 0.940194
window3492

overview

Window 2

Location 6,113,712 – 6,113,806
Length 94
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 92.14
Mean single sequence MFE -17.45
Consensus MFE -16.49
Energy contribution -16.97
Covariance contribution 0.48
Combinations/Pair 1.09
Mean z-score -1.41
Structure conservation index 0.94
SVM decision value 1.28
SVM RNA-class probability 0.940194
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6113712 94 + 27905053
GGUCAACAGACCACAGAGAU--UUUUGUUUUCGCAGAUUUUACUUUGUCUAAAUACUUGGCAUUCCAUUCACGUUUCAAUUCGUAUGCCUAUAUAU
((((....))))((((((..--.(((((....))))).....))))))..........(((((.......(((........))))))))....... ( -17.41)
>DroSec_CAF1 25787 96 + 1
GGUCAACAGACCACAGAGAUAUUUCUGUUUUCGCAGAUUUUACUUUGUCUAAAUACUUGGCAUUCCAUUAACGUUUCAAUUCGUAUGCCUACAUAU
((((....))))((((((.....(((((....))))).....))))))..........(((((.......(((........))))))))....... ( -20.81)
>DroSim_CAF1 26406 96 + 1
GGUCAACAGACCACAGAGAUAUUUCUGUUUUCGCAGAUUUUACUUUGUCUAAAUACUUGGCAUUCCAUUAACGUUUCAAUUCGUAUGCCUACAUAU
((((....))))((((((.....(((((....))))).....))))))..........(((((.......(((........))))))))....... ( -20.81)
>DroEre_CAF1 26243 94 + 1
GGUCAACAGACCACAGAGAU--UUCUGUAUUUGCAAAUUUUACUUUGUCUAAAUACUUGGCAUUCCAUUAACGUUUCAUUUUGUUUGCCUACAUAU
((((....))))........--....(((((((((((......)))))..))))))..((((.......((((........))))))))....... ( -15.01)
>DroYak_CAF1 26751 94 + 1
GGUCAACAGACCAAAGAGUU--UUCUGUAUUCGCACAUUUUACUUUGUCUAAAUACUUGGCAUUGCCUUAACGUUUAAAUUUGUAUGCCUACAUAU
((((....))))........--....(((((.(.(((........))).).)))))..(((((.......(((........))))))))....... ( -13.21)
>consensus
GGUCAACAGACCACAGAGAU__UUCUGUUUUCGCAGAUUUUACUUUGUCUAAAUACUUGGCAUUCCAUUAACGUUUCAAUUCGUAUGCCUACAUAU
((((....))))((((((.....(((((....))))).....))))))..........(((((.......(((........))))))))....... (-16.49 = -16.97 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:22 2006