Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 880,445 – 880,596 |
Length | 151 |
Max. P | 0.886398 |
Location | 880,445 – 880,565 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.93 |
Mean single sequence MFE | -47.90 |
Consensus MFE | -39.41 |
Energy contribution | -40.23 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.08 |
Mean z-score | -1.95 |
Structure conservation index | 0.82 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.886398 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 880445 120 + 27905053 GGUCGGGGCAGCACGAACACGUGACUCGGAUUCCUCCGACGAGGCGGUUUUUAUUUUCACUCGUUGGAGGCUUUGGAACACUACUCUGAGGUGACCUCCGCCUCCAGGUUCCUCCGGCCA ((((((((.(((........(((..((.((..(((((((((((..((.........)).)))))))))))..)).)).)))....((((((((.....))))).)))))).)))))))). ( -52.00) >DroSec_CAF1 48466 119 + 1 GGUCGGGGCAGCAUGAACACGUGACUCGGAUUCCUCCGACCAGGCGGUUUUUAUUUUCGCUCGUUGGAGGCU-UGGAACGCUACUCGGAGGUGACCUCCGCCUCCAGGUUCCUCCGGCCA ((((((((.(((........(((..((.((..((((((((..(((((.........))))).)))))))).)-).)).)))..((.(((((((.....)))))))))))).)))))))). ( -51.70) >DroSim_CAF1 47677 119 + 1 GGUCGGGGCAGCACGAACACGUGACUCGGAUUCCUCCGACCAGGCGGUUUUUAUUUUCACUCGUUGGAGGCU-UGGAACGCUACUCGGAGGUGACCUCCGCCUCCAGGUUCCUCCGGCCA ((((((((.(((........(((..(((((....)))))((((((((.........)).(((....))))))-)))..)))..((.(((((((.....)))))))))))).)))))))). ( -48.90) >DroEre_CAF1 47457 106 + 1 GGUCGGGGCAGCAU-------------GGAUUUCUCCUGCUAGGCGC-UUUUAUUUUCACUCGUUGGAGGCUUUGAGACGUUGCUGGGAGCUGACCUCCGCCUCCAGGUUCCUCCGGCCA ((((((((.((((.-------------(((....)))))))......-...............((((((((....((......)).((((.....))))))))))))....)))))))). ( -39.00) >consensus GGUCGGGGCAGCACGAACACGUGACUCGGAUUCCUCCGACCAGGCGGUUUUUAUUUUCACUCGUUGGAGGCU_UGGAACGCUACUCGGAGGUGACCUCCGCCUCCAGGUUCCUCCGGCCA ((((((((.(((........((((...(((..((.((.....)).))..)))....))))...((((((((..(((....)))...((((.....))))))))))))))).)))))))). (-39.41 = -40.23 + 0.81)
Location | 880,485 – 880,596 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.87 |
Mean single sequence MFE | -42.17 |
Consensus MFE | -36.65 |
Energy contribution | -37.65 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.43 |
Structure conservation index | 0.87 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.619237 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 880485 111 - 27905053 ---------UGGGCUUCCAAGGCCAGAGUGUGGCAACAAUUGGCCGGAGGAACCUGGAGGCGGAGGUCACCUCAGAGUAGUGUUCCAAAGCCUCCAACGAGUGAAAAUAAAAACCGCCUC ---------.((((((((..((((((....((....)).))))))...))))..(((((((...((.(((.........)))..))...)))))))...................)))). ( -38.60) >DroSec_CAF1 48506 119 - 1 CCCAUUGUGUGGGCUUCCAAGGCCAGAGUGUGGCAACAAUUGGCCGGAGGAACCUGGAGGCGGAGGUCACCUCCGAGUAGCGUUCCA-AGCCUCCAACGAGCGAAAAUAAAAACCGCCUG (((((...)))))(((((..((((((....((....)).)))))))))))....((((((((((((...)))))(((.....)))..-.)))))))....(((...........)))... ( -44.00) >DroSim_CAF1 47717 119 - 1 CCCAUUGUGGGGGCUUCCAAGGCCAGAGUGUGGCAACAAUUGGCCGGAGGAACCUGGAGGCGGAGGUCACCUCCGAGUAGCGUUCCA-AGCCUCCAACGAGUGAAAAUAAAAACCGCCUG ..((((.(((((((((((..((((((....((....)).)))))))))((((((((....((((((...))))))..))).))))).-))))))))...))))................. ( -48.00) >DroEre_CAF1 47484 119 - 1 CCCGUUGUGUGGGCUUCCAAGGCCAGAGUGAGGCAGCAAUUGGCCGGAGGAACCUGGAGGCGGAGGUCAGCUCCCAGCAACGUCUCAAAGCCUCCAACGAGUGAAAAUAAAA-GCGCCUA ......(((((((.((((..((((((..((......)).))))))...)))))))((((((.((((...((.....))....))))...)))))).................-))))... ( -38.10) >consensus CCCAUUGUGUGGGCUUCCAAGGCCAGAGUGUGGCAACAAUUGGCCGGAGGAACCUGGAGGCGGAGGUCACCUCCGAGUAGCGUUCCA_AGCCUCCAACGAGUGAAAAUAAAAACCGCCUG ..........((((((((..((((((..(((....))).))))))...))))..(((((((((((.....))))(((.....)))....)))))))...................)))). (-36.65 = -37.65 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:45 2006