Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,111,554 – 6,111,652 |
Length | 98 |
Max. P | 0.533615 |
Location | 6,111,554 – 6,111,652 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 84.11 |
Mean single sequence MFE | -20.95 |
Consensus MFE | -12.73 |
Energy contribution | -12.61 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.11 |
Mean z-score | -1.84 |
Structure conservation index | 0.61 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.533615 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6111554 98 - 27905053 UACCUUCUAACAAGGAAAGUACGGCAGUAAUCAUUAUGUUUAAGCUGCCGUGUUUGGCUUACAAAUUUAAUGCAUUAUUUUGCAUUUGCAUUACAAAU---- ..((((.....))))....(((((((((...............)))))))))((((.....))))..(((((((............))))))).....---- ( -21.76) >DroSec_CAF1 23674 91 - 1 UACCUUCUAACAAGGAAAGUAUGGCAGUUACCAUUAUGCUUAAGCUACCGUGUUUGCCUUACAAAUUUAAUGCAUUAUUGC-----------ACAAAUGAUA ..((((.....))))...(((.(((((.(((......((....))....))).))))).)))........((((....)))-----------)......... ( -17.70) >DroSim_CAF1 24277 91 - 1 UACCUUCUAACAAGGAAAGUAUGGCAGUUACCAUUAUGCUUAAGCUGCCGUGUUUGGCUUACAAAUUUAAUGCAUUAUUGC-----------ACAAAUGAUA ..((((.....))))....((((((((((.............))))))))))((((.....)))).....((((....)))-----------)......... ( -18.62) >DroEre_CAF1 23952 91 - 1 UACCUUCUAACAAGGAAAGUAAGGCAGUGAGCAUUAUGCGUAAGCUGUCGUGUUUGGCUUACAAACUUAAUGCAUUAUUGC-----------ACAAGCUAUA ..((((.....))))..(((...(((((((((((((...((((((((.......)))))))).....)))))).)))))))-----------....)))... ( -25.70) >consensus UACCUUCUAACAAGGAAAGUAUGGCAGUUACCAUUAUGCUUAAGCUGCCGUGUUUGGCUUACAAAUUUAAUGCAUUAUUGC___________ACAAAUGAUA ..((((.....))))...(((.((((((...............))))))..(((((.....)))))....)))............................. (-12.73 = -12.61 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:21 2006