Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,109,546 – 6,109,640 |
Length | 94 |
Max. P | 0.636650 |
Location | 6,109,546 – 6,109,640 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 76.16 |
Mean single sequence MFE | -22.56 |
Consensus MFE | -6.80 |
Energy contribution | -7.80 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.22 |
Mean z-score | -1.80 |
Structure conservation index | 0.30 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.636650 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6109546 94 + 27905053 UUAGCAUUCAUUUGUGUUUACAAUCAACGGAAUUGUGAAAAGCUAUAGAUGAGAAUUUCCAGAAAUG---------------AAAUUCUACUUUAUUAGUCUAAAUAAC (((((..((((((((((((((((((....).))))))))....)))))))))(((((((.(....))---------------))))))..........).))))..... ( -18.00) >DroSec_CAF1 21632 109 + 1 UUGGCAUUCAUUUGUGUUUACAAUCAACGGAAUUCUGAAAAGCUCUAGCUGAGAAUUUCCAGAAAUGAGUUAAAUGGAUUCGAAAUUCCAUUUUAUUAGCCUAAAUAAC ..(((((((((((.((............((((((((....(((....))).)))))))))).)))))))).(((((((........))))))).....)))........ ( -26.10) >DroSim_CAF1 22236 109 + 1 UUGGCAUUCAUUUGUGUUUACAAUCAACGGAAUUCUGAAAAGCUAUAGCUGAGAAUUUCCAGAAAUGAGUUAAAUGGAUUGGAAAUUCCAUUUUAUUAGCCUAAAUAAC ..(((((((((((.((............((((((((....(((....))).)))))))))).)))))))).(((((((.(....).))))))).....)))........ ( -26.70) >DroEre_CAF1 22038 96 + 1 UUGGCAUUCAUUUGUGUUUACAGUCAACGGAAUUCUGAA-AGUUGUAGCU-AGAAUU-CCAGCAA----------CGAUUCGAGAUUCUACUUUAUAAGCCUAAAUUAC ..(((......((((....)))).....(((((..(((.-.(((((.(((-.(....-).))).)----------)))))))..))))).........)))........ ( -18.30) >DroYak_CAF1 22428 100 + 1 UUGGCAUUCAGUUGUGUUUACAAUCAACGGAAUUCUGACGAGUAAU------GACUU-UCGACGG--CGUAAAAUGGAUUUAGAAUUCUAUUUUAUGAGCCCAAAUUAG ..(((.....((((.(((.....((..(((....)))..)).....------)))..-.))))..--(((((((((((........))))))))))).)))........ ( -23.70) >consensus UUGGCAUUCAUUUGUGUUUACAAUCAACGGAAUUCUGAAAAGCUAUAGCUGAGAAUUUCCAGAAAUG_GU_AAAUGGAUUCGAAAUUCUAUUUUAUUAGCCUAAAUAAC ..(((......((((....)))).....((((((((....(((....))).)))))).))......................................)))........ ( -6.80 = -7.80 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:20 2006