Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,103,124 – 6,103,216 |
Length | 92 |
Max. P | 0.952518 |
Location | 6,103,124 – 6,103,216 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 84.01 |
Mean single sequence MFE | -31.77 |
Consensus MFE | -24.84 |
Energy contribution | -24.57 |
Covariance contribution | -0.27 |
Combinations/Pair | 1.31 |
Mean z-score | -3.75 |
Structure conservation index | 0.78 |
SVM decision value | 1.42 |
SVM RNA-class probability | 0.952518 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6103124 92 + 27905053 UACAAAUGCCACACUUGCAUAUGGGUUAAUGUAAGUGUGUGGGUAGGUUUAAUCAUAAUUUACUAGGCCAGCGGCCACAGCUGUUGGCUUUU ........((((((((((((........))))))))))).)((((((((.......))))))))(((((((((((....))))))))))).. ( -35.40) >DroSec_CAF1 15273 91 + 1 UGCAAACG-CACACUUGCAUGUGGGUUAAUGUAAGUGUGUGGGUAGGUUUAAUCAUAAUUUACUAGGCCAGCGGCCACAGCUGUUGGCUUUU ......((-(((((((((((........)))))))))))))((((((((.......))))))))(((((((((((....))))))))))).. ( -41.00) >DroSim_CAF1 15818 91 + 1 UGCAAACG-CACACUUGCAUGUGGGUUAAUGUAAGUGUGUGGGUAGGUUUAAUCAUAAUUUACUAGGCCAGCGGCCACAGCUGUUGGCUUUU ......((-(((((((((((........)))))))))))))((((((((.......))))))))(((((((((((....))))))))))).. ( -41.00) >DroEre_CAF1 15502 91 + 1 AGCAAAUG-CGCACUUGUAUGUGGGUUAAUGUAAGUGUGAGGGUGAUUUUAAUCAUAAUUUACUAGGCCAGCGGCCACAGCUGUUGGCUUUU .(((...(-(.(((......))).))...))).((((.((..(((((....)))))..))))))(((((((((((....))))))))))).. ( -29.20) >DroYak_CAF1 15668 91 + 1 UGCAAAGG-CGCACUUGUAUGUGGGUUAAUGUAAGUGUGAGGGUGAUUUUAAUCAUAAUUUACUAGGCCAGCGGCCACAGCUGUUGGCUUUU ((((..((-(.(((......))).)))..))))((((.((..(((((....)))))..))))))(((((((((((....))))))))))).. ( -30.40) >DroPer_CAF1 16648 83 + 1 UGUAUCUG-AAUACACGUAUCUG------UGUAACUGUG--UGUAAUAUUAAUUAUAAUUUACUGGACCAAUGCCCACAGAUGUUUGUUUUU .......(-((.(((..((((((------((........--((((((....)))))).......((.......))))))))))..))).))) ( -13.60) >consensus UGCAAAUG_CACACUUGCAUGUGGGUUAAUGUAAGUGUGUGGGUAAGUUUAAUCAUAAUUUACUAGGCCAGCGGCCACAGCUGUUGGCUUUU .........(((((((((((........)))))))))))..(((((.((.......)).)))))(((((((((((....))))))))))).. (-24.84 = -24.57 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:17 2006