Locus 2134

Sequence ID 3R_DroMel_CAF1
Location 6,102,055 – 6,102,155
Length 100
Max. P 0.558595
window3484

overview

Window 4

Location 6,102,055 – 6,102,155
Length 100
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 82.73
Mean single sequence MFE -19.42
Consensus MFE -12.43
Energy contribution -14.52
Covariance contribution 2.09
Combinations/Pair 1.19
Mean z-score -1.91
Structure conservation index 0.64
SVM decision value 0.05
SVM RNA-class probability 0.558595
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6102055 100 + 27905053
CUUCUUGUAAGCUAAAUGUCGUACAUUUAGCUGUUUUGUUGUCAUUUCUCUUUGUUGUUCCUAUUAUUACGGCUGUUGAAAUAGUUUUACGAGAUAGUUU
..((((((((((((((((.....)))))))))...........(((((.....(((((..........)))))....))))).....)))))))...... ( -22.80)
>DroGri_CAF1 14312 78 + 1
CUU---CUGCGCUAAAUGUCGUCCAUUAAAU------------------GCUUUUUGUGUUUGUCUUUAUGGUUGUUGAAAUAGUUUUAUGACAUUGUC-
...---........(((((((((((((((((------------------((.....))))))).....))))................))))))))...- ( -10.39)
>DroSec_CAF1 14230 100 + 1
CUUCUUGUAAGCUAAAUGUCGUACAUUUAGCUGUUUUGUUGUCAUUUCUCUUUGUUGUUCCUAUUAUUACGGCUGUUGAAAUAGUUUUACGAGAUGGUUU
..((((((((((((((((.....)))))))))...........(((((.....(((((..........)))))....))))).....)))))))...... ( -22.80)
>DroSim_CAF1 14795 100 + 1
CUUUUUGUAAGCUGAAUGUCGUACAUUUAGCUGUUUUGUUGUCAUUUCUCUUUGUUGUUCCUAUUAUUACGGCUGUUGAAAUAGUUUUACGAGAUAGUUU
.........(((((((((.....)))))))))(((((((.(..(((((.....(((((..........)))))....)))))..)...)))))))..... ( -21.10)
>DroEre_CAF1 14386 100 + 1
CUUCUUGUAAGCUAAAUGUCGUACAUUUAGCUAUUUUGUUGCCAUUUCUCUUUGUUGUUCCUAUUAUUACGGCCGUUGAAAUAGUUUUACGAGAUAGUUU
..((((((((((((((((.....)))))))))........((.(((((.....(((((..........)))))....))))).))..)))))))...... ( -22.80)
>DroYak_CAF1 14578 100 + 1
CUUCUUGUACACUAAAUGUCGUACAUUUAGCUGUUUUGUUGUCAUUUCUCUUUGUUUUUCCUAUUAUUACGGCUGUUGAAAUAGUUUUACGAGAUAGUUU
..(((((((..(((((((.....)))))))((((((((..(((...........................)))...))))))))...)))))))...... ( -16.63)
>consensus
CUUCUUGUAAGCUAAAUGUCGUACAUUUAGCUGUUUUGUUGUCAUUUCUCUUUGUUGUUCCUAUUAUUACGGCUGUUGAAAUAGUUUUACGAGAUAGUUU
..((((((((((((((((.....)))))))))...........(((((.....(((((..........)))))....))))).....)))))))...... (-12.43 = -14.52 +   2.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:14 2006