Locus 2131

Sequence ID 3R_DroMel_CAF1
Location 6,095,363 – 6,095,466
Length 103
Max. P 0.971757
window3480

overview

Window 0

Location 6,095,363 – 6,095,466
Length 103
Sequences 4
Columns 105
Reading direction forward
Mean pairwise identity 90.51
Mean single sequence MFE -15.84
Consensus MFE -13.98
Energy contribution -14.72
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -2.26
Structure conservation index 0.88
SVM decision value 1.68
SVM RNA-class probability 0.971757
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6095363 103 + 27905053
UAAAUAUUGCAGUGGAAAGAAUGCACUUUGCAUUCCACAUUGCAAUCAUCCCCCGGCCU--CCAAAAACCCAUUCAAACAAACAAAAGAAGCAUGAAAACAAACA
.....(((((((((....((((((.....))))))..))))))))).............--............................................ ( -17.70)
>DroSec_CAF1 7498 105 + 1
UAAAUAUUACAGUGGAAAGAAUGCACUUUGCAUUCCACAUUGCAAUCAUGCCCAGCCCCAGCCAAAAACCCAUCCAGACAAAGAAAAGAAGCAUGAAAACAAACA
.........(((((....((((((.....))))))..)))))...((((((...((....))..........((........))......))))))......... ( -17.60)
>DroEre_CAF1 7414 99 + 1
UAAAUAUUGCAGUGGAAAGAAAGCACUUUGCAUUCCACAUUGCAAUCAUCCC--GCCC----GAAAAACCCAUCCAAACAAACAAAAGAAGCAUGAAAACAAACA
.....(((((((((....(((.((.....)).)))..)))))))))......--....----........................................... ( -13.40)
>DroYak_CAF1 7638 101 + 1
UUAAUAUUGCAGUGGAAAGAAAGCACUUUGCAUUCCACAUUGCAAUCAUCUC--GCUCC--GCAAAAACCCAUCCAAACAAACAAAAGAAGCAUGAAAACAAACA
.....(((((((((....(((.((.....)).)))..)))))))))..((..--(((.(--..........................).)))..))......... ( -14.67)
>consensus
UAAAUAUUGCAGUGGAAAGAAAGCACUUUGCAUUCCACAUUGCAAUCAUCCC__GCCCC__CCAAAAACCCAUCCAAACAAACAAAAGAAGCAUGAAAACAAACA
.....(((((((((....((((((.....))))))..)))))))))........................................................... (-13.98 = -14.72 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:10 2006