Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,093,976 – 6,094,070 |
Length | 94 |
Max. P | 0.914444 |
Location | 6,093,976 – 6,094,070 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 76.45 |
Mean single sequence MFE | -19.31 |
Consensus MFE | -11.51 |
Energy contribution | -11.93 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.20 |
Mean z-score | -1.92 |
Structure conservation index | 0.60 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.914444 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6093976 94 + 27905053 AGUCCGCAGCACGUUCCCAAUUAAUC---GCCGCUCGCU---UCAUUUUAUCUACGAGCAUCCAACUAUCAGUUGG--CGCUGCGCUGAUCAACACCUUCA---A .(((((((((................---...(((((..---............)))))..(((((.....)))))--.))))))..)))...........---. ( -23.34) >DroSec_CAF1 6037 97 + 1 AGUCCACAGCACGUUCCCAAUUAAUCGACGCCACUCGCU---UCAUUUUAUCUACGAGCAUCCAACUAUCAGUUGG--CGCUGCGCUGAUCAACACCUUCA---A ......((((.(((........(((.((.((.....)).---)))))......))).(((.(((((.....)))))--...))))))).............---. ( -17.84) >DroSim_CAF1 6012 97 + 1 AGUCCGCAGCACGUUCCCAAUUAAUCGACGCCGCUCGCU---UCAUUUUAUCUACGAGCAUCCAACUAUCAGUUGG--CGCUGCGCUGAUCAACACCUUCA---A .(((((((((......................(((((..---............)))))..(((((.....)))))--.))))))..)))...........---. ( -23.34) >DroEre_CAF1 6038 86 + 1 AGUCAGCAGCACGUUCCCAAUUAAUCGCUCAUCUC--------------AACCACGAGCAUCCAACUAUCAGUUGC--CGCUGCUCUGAUCAACACCUCCA---A .(((((.((((((.............((((.....--------------......))))...((((.....)))).--)).)))))))))...........---. ( -18.00) >DroYak_CAF1 6216 97 + 1 AGUCCGCAGCACGUUCCCAAUUAAUCGCUCAUUUUAUCU---UCACUUUAUCUACGAGCAUCCAACUAUCAGUUGG--CGCUGCUCUGAUCAACACCUUUA---U .....(((((................((((.........---.............))))..(((((.....)))))--.))))).................---. ( -19.05) >DroAna_CAF1 5612 103 + 1 --CCAGCAGCACGCUCCCAAUUAAUCUCUCACUUGGUCUCUGUCUCUAUCUCUCCGACUGCCCGGCUAUCAUGCGGCCCGCAGCUCCGAUCAACACCUUCGCCCA --..(((.....))).................((((((..........((.....))((((..((((.......)))).))))....))))))............ ( -14.30) >consensus AGUCCGCAGCACGUUCCCAAUUAAUCGCUCACGCUCGCU___UCAUUUUAUCUACGAGCAUCCAACUAUCAGUUGG__CGCUGCGCUGAUCAACACCUUCA___A ....((((((..((((.......................................))))..(((((.....)))))...)))))).................... (-11.51 = -11.93 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:09 2006