Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 879,771 – 879,926 |
Length | 155 |
Max. P | 0.660067 |
Location | 879,771 – 879,886 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.09 |
Mean single sequence MFE | -38.14 |
Consensus MFE | -29.79 |
Energy contribution | -29.85 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.17 |
Mean z-score | -1.59 |
Structure conservation index | 0.78 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.660067 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 879771 115 - 27905053 CUGGUCAAAGGAACCUGGAGGCGGCGUGCCCUUCGUGCGGAGCCAUUCGUUAAUGGCAGAUCCGCAGAUUGCAUGUUCCGAACCCAUAAUCCUCUUCACUUGGAAACAU-----AUGACG ...((((.((((...(((...((((((((...((.((((((((((((....))))))...))))))))..)))))..)))...)))...)))).......((....)).-----.)))). ( -40.10) >DroSec_CAF1 47780 115 - 1 CUGGUCAAUGGGACCUGGAAGUGGCUUGCCCUUCGUGCGGAGCCAUUUGUUAAUGGCACAGCCGCAGAUUGCAUGUUCCGAACCCAUAAUCCUCUUCACUUGGAAACAU-----AUGACG ..((...(((((...((((....((.(((...((.(((((.((((((....))))))....)))))))..))).))))))..)))))...))...(((..((....)).-----.))).. ( -37.30) >DroSim_CAF1 46980 115 - 1 CUGGUCAAUGGGACCUGCAAGUGGCUUGCCCUUCGUGCGGAGCCAUUCGCUAAUGGCACAGCCGCAGAUUGCAUGUUCCGAACCCAUAAUCCUCUUCACUUGGAAACAU-----AUGACG ..(((...((((((.(((((((((((((((......(((((....)))))....)))).))))))...))))).)))))).)))...........(((..((....)).-----.))).. ( -40.70) >DroEre_CAF1 46884 116 - 1 CAGGUCAAUAGGACCUGGAAGUGG----ACCUUCGUGUGGAGUUAUCCGUUAAUGGCAGAGCCGCAGAUUGCAUGUUCCGAACCCAUAAUCCUCUCUACUUGGAAACAUGUAGUAUGACG ((((((.....))))))...((((----..((((((.((((....))))...)))).))..))))..((((((((((((((..................)))).))))))))))...... ( -34.47) >consensus CUGGUCAAUGGGACCUGGAAGUGGCUUGCCCUUCGUGCGGAGCCAUUCGUUAAUGGCACAGCCGCAGAUUGCAUGUUCCGAACCCAUAAUCCUCUUCACUUGGAAACAU_____AUGACG ...((((..(((((.((((((.((....)))))).(((((.((((((....))))))....))))).....)).))))).....................((....)).......)))). (-29.79 = -29.85 + 0.06)
Location | 879,806 – 879,926 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.29 |
Mean single sequence MFE | -34.65 |
Consensus MFE | -22.84 |
Energy contribution | -24.40 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.14 |
Mean z-score | -1.57 |
Structure conservation index | 0.66 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.531852 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 879806 120 + 27905053 CGGAACAUGCAAUCUGCGGAUCUGCCAUUAACGAAUGGCUCCGCACGAAGGGCACGCCGCCUCCAGGUUCCUUUGACCAGGUCAUCCUUGCCUCGACCCUUUACCUUAAUCAUUUUAAUC .(((((.((...((((((((...((((((....)))))))))))).)).((((.....)))).)).)))))........((((...........))))...................... ( -32.80) >DroSec_CAF1 47815 118 + 1 CGGAACAUGCAAUCUGCGGCUGUGCCAUUAACAAAUGGCUCCGCACGAAGGGCAAGCCACUUCCAGGUCCCAUUGACCAGGUCAUCCUUGCCUCGACCCUUUACCUUAAUCAUUGCGA-- .......((((((.(((((....((((((....)))))).)))))(((..((((((......((.((((.....)))).)).....)))))))))................)))))).-- ( -37.00) >DroSim_CAF1 47015 118 + 1 CGGAACAUGCAAUCUGCGGCUGUGCCAUUAGCGAAUGGCUCCGCACGAAGGGCAAGCCACUUGCAGGUCCCAUUGACCAGGUCAUCCUUGCCUCGACCCUUUACCUUAAUCAUUGCGA-- .......((((((.(((((....((((((....)))))).)))))..(((((((((...))))).((((.....)))).((((...........)))).....))))....)))))).-- ( -36.30) >DroEre_CAF1 46924 112 + 1 CGGAACAUGCAAUCUGCGGCUCUGCCAUUAACGGAUAACUCCACACGAAGGU----CCACUUCCAGGUCCUAUUGACCUGGUCAUCUUUGGUGCGACCCU-UACCUGAGUCAGUU-GA-- ...(((..((.....))(((((..........(((....))).......(((----(((((.(((((((.....)))))))........)))).))))..-.....))))).)))-..-- ( -32.50) >consensus CGGAACAUGCAAUCUGCGGCUCUGCCAUUAACGAAUGGCUCCGCACGAAGGGCAAGCCACUUCCAGGUCCCAUUGACCAGGUCAUCCUUGCCUCGACCCUUUACCUUAAUCAUUGCGA__ .((.........(((((((....((((((....)))))).))))).)).(((((((......((.((((.....)))).)).....)))))))..........))............... (-22.84 = -24.40 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:43 2006