Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,093,298 – 6,093,415 |
Length | 117 |
Max. P | 0.701539 |
Location | 6,093,298 – 6,093,415 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.43 |
Mean single sequence MFE | -23.34 |
Consensus MFE | -21.29 |
Energy contribution | -21.97 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.09 |
Mean z-score | -1.46 |
Structure conservation index | 0.91 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.701539 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6093298 117 - 27905053 GAAACUGAGCAAGAGUCUUACGCCAGAAUUCAGUAAAUUGGGAUUCGAUAAGGACAACCCUUUUGUCUUAUCGAAAUGUAACCGAUUUUACCUUUUCAUCUACAAAAAAC---ACAUACA (((((((.((...........)))))......(((((((((..(((((((((.((((.....)))))))))))))......)))).)))))..)))).............---....... ( -22.70) >DroSec_CAF1 5351 113 - 1 GAAACUGAGCAAGAGUCUUACGCCACAGCUCAGUAAAUUGGGAUUCAAUAAGGACAACCCUUUUGUCUUAUCGAAAUGCAACCGAUUUUACCUUUUCAUCUACAAAAAAC---ACA---- ((((((((((....((.....))....)))))))(((((((..(((.(((((.((((.....))))))))).)))......)))))))......))).............---...---- ( -21.20) >DroSim_CAF1 5342 113 - 1 GAAACUGAGCAAGAGUCUUACGCCACAGCUCAGUAAAUUGGGAUUCGAUAAGGACAACCCUUUUGUCUUAUCGAAAUGCAACCGUUUUUACCUUUUCAUCUACAAAAAAC---ACA---- ...(((((((....((.....))....)))))))...(((.(.(((((((((.((((.....))))))))))))).).)))..((((((...............))))))---...---- ( -25.36) >DroEre_CAF1 5350 120 - 1 GAAACUGAGCAAGAGUCUUGGGCCACAACUCAGUAAAUUGGGAUACGAUAAGCACGAGUCUUUUGUCUUAUCGAAAUGCAUCCAAUUUUUUAUGUUCAUCUCAAAAAGGCAAGUAAUUAA ((...((((((((((..(((((......(((((....)))))...(((((((.(((((...)))))))))))).......)))))..)))).))))))..)).................. ( -24.10) >consensus GAAACUGAGCAAGAGUCUUACGCCACAACUCAGUAAAUUGGGAUUCGAUAAGGACAACCCUUUUGUCUUAUCGAAAUGCAACCGAUUUUACCUUUUCAUCUACAAAAAAC___ACA____ ((((((((((....((.....))....)))))))(((((((..(((((((((.((((.....)))))))))))))......)))))))......)))....................... (-21.29 = -21.97 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:09 2006