Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,091,236 – 6,091,326 |
Length | 90 |
Max. P | 0.745031 |
Location | 6,091,236 – 6,091,326 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 65.92 |
Mean single sequence MFE | -18.07 |
Consensus MFE | -9.75 |
Energy contribution | -9.53 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.17 |
Mean z-score | -1.51 |
Structure conservation index | 0.54 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.745031 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6091236 90 - 27905053 AC---------UUAACGAAUAUGAUUUAUACCAAAAUAAAGUC-------UUUUAA-UUUAAAUUGAUAAAUUUCUUCUUGUGUAAGUGCGCCGCCACCGGCGUCCC ((---------(((((((....(((((((..(((..((((...-------......-))))..)))))))))).....)))).)))))((((((....))))))... ( -15.30) >DroEre_CAF1 3161 107 - 1 UCUCAACGAUUUUGACAAAUACAACUUACACCUAAUUAAAAUCGUCGAUAUUUAAAGCUAAAAUGUAUGAAUUUCUUUUUGUGUAAUUGCGCCGCCACCGGCGCCUC ..((((.....))))..........((((((..((..(((.((((..((((((.......)))))))))).)))..))..))))))..((((((....))))))... ( -19.50) >DroYak_CAF1 3258 90 - 1 GCGCAAUGAUUUAGAC--AUACAAUUUAAACCUUA---------------UUUAAAAUAUAAAUUGAUUCAUUUCUUUUUGUGUAAUUGCGCCGCCGCCGGCGUCUC (((((((.........--......((((((.....---------------))))))(((((((..((......))..))))))).)))))))((((...)))).... ( -19.40) >consensus AC_CAA_GAUUUUGAC_AAUACAAUUUAAACCUAA_UAAA_UC_______UUUAAA_UUUAAAUUGAUAAAUUUCUUUUUGUGUAAUUGCGCCGCCACCGGCGUCUC ........................................................................................((((((....))))))... ( -9.75 = -9.53 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:08 2006