Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,091,041 – 6,091,162 |
Length | 121 |
Max. P | 0.974673 |
Location | 6,091,041 – 6,091,133 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 79.93 |
Mean single sequence MFE | -29.63 |
Consensus MFE | -15.31 |
Energy contribution | -16.15 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.16 |
Mean z-score | -2.21 |
Structure conservation index | 0.52 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.692039 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6091041 92 + 27905053 AGCGAUGAACUCCCUCGCGCUCUGAUCAGAACGGG---AAGAAGAAGCAGCCGCAUUUGCAGCUGCGCCGAGCGAUCAUUUUCGCAUACUUCUUU .((((.(.....).))))(.(((....))).)..(---((((((..(((((.((....)).))))).....((((......))))...))))))) ( -30.40) >DroSec_CAF1 3034 92 + 1 AGCGAUGAACUCCCUCGCGUUCUGAUCAGAACAGG---AAGAAGAAGCAGUCGCAUUUGCAGCUGCGCCGAGCGAUCAUUUUCGCAUACUUCUUU .((((.(.....).))))(((((....)))))..(---((((((..(((((.((....)).))))).....((((......))))...))))))) ( -33.00) >DroSim_CAF1 3018 92 + 1 AGCGAUGAACUCCCUCGCGUUCUGAUCAGAACAGG---AAGAAGAAGCAGUCGCAUUUGCAGCUGCGCCCAGCGAUCAUUUUCGCAUACUUCUUU .((((.(.....).))))(((((....)))))..(---((((((..(((((.((....)).))))).....((((......))))...))))))) ( -33.00) >DroEre_CAF1 2969 89 + 1 AGCGAUGAACUCCCUCGC--UCUGAUCAGAACGGG---AAGAAGAAGCAGCGGCAUUUGCAGCUGCGCCAAGCGAUCAUUUUCGCAUACUU-UUU .............((((.--(((....))).))))---((((((..(((((.((....)).))))).....((((......))))...)))-))) ( -27.00) >DroYak_CAF1 3063 92 + 1 AGCGAUGAACUCCCUCGC--UCUGAUCAGAACGGGAGGAAGAAGAAGAAGCAGCAUUUGCAGCUGCGGCAAGCGAUCAUUUUCGCAUACUU-UUU ..........(((((((.--(((....))).)))).)))..((((((..(((((.......))))).....((((......))))...)))-))) ( -27.60) >DroPer_CAF1 3005 79 + 1 CACGAUGAACUCCCGCACUGCUUGCUCAGGCAGGG---CAGCAACAGCAAUAGCAGCUGCAGCUGCGCUUCUCCGUCAAC----CA--------- ...((((.......((.((((((....)))))).(---((((..((((.......))))..))))))).....))))...----..--------- ( -26.80) >consensus AGCGAUGAACUCCCUCGCG_UCUGAUCAGAACGGG___AAGAAGAAGCAGCCGCAUUUGCAGCUGCGCCAAGCGAUCAUUUUCGCAUACUU_UUU .((((.(.....).))))..(((....)))................(((((.((....)).))))).....((((......)))).......... (-15.31 = -16.15 + 0.84)
Location | 6,091,041 – 6,091,133 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 79.93 |
Mean single sequence MFE | -32.28 |
Consensus MFE | -17.84 |
Energy contribution | -18.35 |
Covariance contribution | 0.51 |
Combinations/Pair | 1.45 |
Mean z-score | -2.38 |
Structure conservation index | 0.55 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.851918 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6091041 92 - 27905053 AAAGAAGUAUGCGAAAAUGAUCGCUCGGCGCAGCUGCAAAUGCGGCUGCUUCUUCUU---CCCGUUCUGAUCAGAGCGCGAGGGAGUUCAUCGCU ...(((((..((((......))))...))((((((((....))))))))..((((((---(.((((((....)))))).))))))))))...... ( -38.40) >DroSec_CAF1 3034 92 - 1 AAAGAAGUAUGCGAAAAUGAUCGCUCGGCGCAGCUGCAAAUGCGACUGCUUCUUCUU---CCUGUUCUGAUCAGAACGCGAGGGAGUUCAUCGCU ...(((((..((((......))))...))((((.(((....))).))))..((((((---(.((((((....)))))).))))))))))...... ( -30.20) >DroSim_CAF1 3018 92 - 1 AAAGAAGUAUGCGAAAAUGAUCGCUGGGCGCAGCUGCAAAUGCGACUGCUUCUUCUU---CCUGUUCUGAUCAGAACGCGAGGGAGUUCAUCGCU ..........((((......))))..(((((((.(((....))).))))..((((((---(.((((((....)))))).)))))))......))) ( -30.30) >DroEre_CAF1 2969 89 - 1 AAA-AAGUAUGCGAAAAUGAUCGCUUGGCGCAGCUGCAAAUGCCGCUGCUUCUUCUU---CCCGUUCUGAUCAGA--GCGAGGGAGUUCAUCGCU ...-......((((......))))..((((((((.((....)).))))).....(((---((((((((....)))--))).)))))......))) ( -32.60) >DroYak_CAF1 3063 92 - 1 AAA-AAGUAUGCGAAAAUGAUCGCUUGCCGCAGCUGCAAAUGCUGCUUCUUCUUCUUCCUCCCGUUCUGAUCAGA--GCGAGGGAGUUCAUCGCU ...-..(((.((((......)))).))).(((((.......)))))........(((((((..(((((....)))--)))))))))......... ( -28.90) >DroPer_CAF1 3005 79 - 1 ---------UG----GUUGACGGAGAAGCGCAGCUGCAGCUGCUAUUGCUGUUGCUG---CCCUGCCUGAGCAAGCAGUGCGGGAGUUCAUCGUG ---------..----....(((..(((..(((((.(((((.......))))).))))---)((((((((......))).)))))..)))..))). ( -33.30) >consensus AAA_AAGUAUGCGAAAAUGAUCGCUCGGCGCAGCUGCAAAUGCGACUGCUUCUUCUU___CCCGUUCUGAUCAGA_CGCGAGGGAGUUCAUCGCU ..........((((......((.((((..((((..((....))..)))).............((((((....)))))))))).)).....)))). (-17.84 = -18.35 + 0.51)
Location | 6,091,060 – 6,091,162 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 93.30 |
Mean single sequence MFE | -28.20 |
Consensus MFE | -23.82 |
Energy contribution | -23.74 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.08 |
Mean z-score | -1.92 |
Structure conservation index | 0.84 |
SVM decision value | 1.73 |
SVM RNA-class probability | 0.974673 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6091060 102 + 27905053 CUCUGAUCAGAACGGG---AAGAAGAAGCAGCCGCAUUUGCAGCUGCGCCGAGCGAUCAUUUUCGCAUACUUCUUUCUUAAUUUGUUUUUGCCGAGCCAUUUUUA (((.(...((((((((---((((((..(((((.((....)).))))).....((((......))))...)))))))))......)))))..).)))......... ( -30.90) >DroSec_CAF1 3053 102 + 1 UUCUGAUCAGAACAGG---AAGAAGAAGCAGUCGCAUUUGCAGCUGCGCCGAGCGAUCAUUUUCGCAUACUUCUUUCUUAAUUUGUUUUUGCCGAGCCAUUUUUA .......((((..(((---((((((..(((((.((....)).))))).....((((......))))...)))))))))...)))).................... ( -27.60) >DroSim_CAF1 3037 102 + 1 UUCUGAUCAGAACAGG---AAGAAGAAGCAGUCGCAUUUGCAGCUGCGCCCAGCGAUCAUUUUCGCAUACUUCUUUCUUAAUUUGUUUUUGCCGAGCCAUUUUUA .......((((..(((---((((((..(((((.((....)).))))).....((((......))))...)))))))))...)))).................... ( -27.60) >DroEre_CAF1 2987 100 + 1 -UCUGAUCAGAACGGG---AAGAAGAAGCAGCGGCAUUUGCAGCUGCGCCAAGCGAUCAUUUUCGCAUACUU-UUUCUUAAUUUGUUUGUGCCGAGCCAUUUUUA -......((((..(((---((((((..(((((.((....)).))))).....((((......))))...)))-))))))..)))).................... ( -27.60) >DroYak_CAF1 3081 103 + 1 -UCUGAUCAGAACGGGAGGAAGAAGAAGAAGCAGCAUUUGCAGCUGCGGCAAGCGAUCAUUUUCGCAUACUU-UUUCUUAAUUUGUUUUUGCCAAGCCAUUUUUA -.((...(((((..(((..(((((((((..(((((.......))))).....((((......))))...)))-))))))..)))..)))))...))......... ( -27.30) >consensus _UCUGAUCAGAACGGG___AAGAAGAAGCAGCCGCAUUUGCAGCUGCGCCAAGCGAUCAUUUUCGCAUACUUCUUUCUUAAUUUGUUUUUGCCGAGCCAUUUUUA ........((((((((...((((((..(((((.((....)).))))).....((((......)))).......))))))..))))))))................ (-23.82 = -23.74 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:07 2006