Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,071,220 – 6,071,329 |
Length | 109 |
Max. P | 0.647313 |
Location | 6,071,220 – 6,071,329 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 79.56 |
Mean single sequence MFE | -33.77 |
Consensus MFE | -19.92 |
Energy contribution | -20.70 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.17 |
Mean z-score | -1.74 |
Structure conservation index | 0.59 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.647313 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6071220 109 - 27905053 -------UGCUGACCUGUGGCGCUCCCUCAUCGCUUCCAGCAACUUGAGACUGUUCUCGCUCAGCUGUUUCUCCAACGCCAGGACACGCUGCUCCAGCUGUCCUUCGGCUUCCUGU -------.(((((....((((((.........))...((((....(((((....)))))....))))..........))))(((((.((((...))))))))).)))))....... ( -32.70) >DroPse_CAF1 74287 106 - 1 CGGCCGCCGCUGACUUCU------CGCGCAUGGCUUCCAGCAACUUGAGACUGUUCUCGCUCAGCUGCUUCUCCAGGGCCAGGACACGCUGCUCCAGCUGGCCUUCGGC---CAG- .((((((.(((((.....------.((((.(((...))))).....((((....))))))))))).))......((((((((....)((((...))))))))))).)))---)..- ( -39.00) >DroSec_CAF1 71496 109 - 1 -------UGCUGACCGUUGGCGCUCCCUCAUCGCUUCCAGCAACUUUAGACUGUUCUCGCUCAGCUGUUUCUCCAACGCCAGGACACGCUGCUCCAGCUGUCCUUCGGCUUCCAGU -------.((((...(((((.(..........((.....)).....(((.(((........))))))...).)))))(((((((((.((((...))))))))))..)))...)))) ( -31.40) >DroEre_CAF1 74048 109 - 1 -------CGCUGACCUCUGGCGCUCCCUCAUCGCUUCCAGCAGCUUGAGACUGUUCUCACUCAGCUGCUUCUCCAAUGCCAGGACACGCUGCUCCAGCUGUCCCUCGGCUUCCAGU -------.(((((....((((((.........))....((((((((((((....)))))...)))))))........))))(((((.((((...))))))))).)))))....... ( -38.20) >DroYak_CAF1 74620 109 - 1 -------UGCUGACCUUUGGCGCUCCCUCAUCGCUUCCAGCAACUUGAGACUGUUCUCGCUCAGCUGCUUCUCCAAUGCGAGGACACGCUGCUCCAGCUGUCCUUCGGCUUCCAGU -------.((((.....(((.((...((((..((.....))....))))..(((((((((.................)))))))))....)).)))((((.....))))...)))) ( -30.23) >DroMoj_CAF1 90688 104 - 1 CUC----CUGUUGCUUUUCCUUUUCGCGAACAGCUUCCAGCAGUUUGAGGCUGUUUUCGCUCAGCUGCUUCUCCAGGGCCAGAACACGCUGUUCCAGCUGAGCCUCCG-------- ...----..................(.((((((((((.........)))))))))).)((((((((((((.....))))..((((.....)))).)))))))).....-------- ( -31.10) >consensus _______CGCUGACCUUUGGCGCUCCCUCAUCGCUUCCAGCAACUUGAGACUGUUCUCGCUCAGCUGCUUCUCCAACGCCAGGACACGCUGCUCCAGCUGUCCUUCGGCUUCCAGU ........(((((........................((((....(((((....)))))....))))..............(((((.((((...))))))))).)))))....... (-19.92 = -20.70 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:02 2006