| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,071,009 – 6,071,108 |
| Length | 99 |
| Max. P | 0.690191 |
| Location | 6,071,009 – 6,071,108 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 81.33 |
| Mean single sequence MFE | -35.02 |
| Consensus MFE | -21.21 |
| Energy contribution | -21.10 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.690191 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6071009 99 - 27905053 UCUCCAGGAACUGCAAUCGGUUCUCCAGAUCGGCCCGGGAGGGUAAAUCAGAGAACCGACGCACCAUGCGCUGC---UGCCAUUGUUCGUGGUUUGCCGCUC ...(((.((((.(((.(((((((((..(((..((((....))))..))).)))))))))(((.....)))....---)))....)))).))).......... ( -39.90) >DroVir_CAF1 77961 102 - 1 UUUCCAAGAAUUGUAAGCGAUUUUCCAGAUCAGCCCUUGAAGGCAAAUCGGAGAAACGACGAACCAUUCGCUGCGCUUGCCAGGGUUCGUAAUUUCCCGAUC ......(((((((....)))))))........(((......)))..(((((.((((..(((((((....((.......))...)))))))..))))))))). ( -29.90) >DroPse_CAF1 74075 99 - 1 UCUCCAGGAAUUGCAAUCGGUUUUCCAGAUCGGCCCUUGAGGGCAAAUCGGAGAAACGACGAACCGUUCGCUGC---UGCCAGGGUUCAUAAUUUCCCGAUC ..((..(((((((...(((.((((((.(((..((((....))))..))))))))).))).(((((.(..((...---.)).).))))).)))))))..)).. ( -32.60) >DroGri_CAF1 86068 102 - 1 UUUCCAAGAAUUGUAAACGAUUUUCCAGAUCUGCUCUCGAUGGCAAAUCGGAGAAACGACGAACCAUCCGAUGUUCGGGCCAGGGUUCGUAAUUUCCCGAUC ......(((((((....))))))).......((((......)))).(((((.((((..(((((((.((((.....))))....)))))))..))))))))). ( -30.90) >DroEre_CAF1 73837 99 - 1 UCUCCAGGAACUGCAGUCGGUUCUCCAGAUCCGCCCGAGAGGGUAGAUCAGAGAACCGACGCACCAUGCGCUGC---UGCCAUUGUUCGUGGUUUGCCGCUC ...(((.(((((((.((((((((((..((((..(((....)))..)))).)))))))))))))..(((.((...---.))))).)))).))).......... ( -47.00) >DroMoj_CAF1 90484 102 - 1 UUUCCAGGAAUUGUAGGCGAUUUUCCAAAUCGGCUCUUGACGGCAAAUCGGAGAAACGACGAACCGUUCGCUGCGAUUGCCAGGGUUCGUAAUUUCCCGAUC ....(((((......(.(((((.....))))).)))))).......(((((.((((..(((((((.(..((.......)).).)))))))..))))))))). ( -29.80) >consensus UCUCCAGGAAUUGCAAUCGAUUUUCCAGAUCGGCCCUUGAGGGCAAAUCGGAGAAACGACGAACCAUUCGCUGC___UGCCAGGGUUCGUAAUUUCCCGAUC (((((.(((((((....)))))))...(((..(((......)))..))))))))....(((((((....((.......))...)))))))............ (-21.21 = -21.10 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:01 2006