Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,069,817 – 6,069,922 |
Length | 105 |
Max. P | 0.783643 |
Location | 6,069,817 – 6,069,922 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 82.07 |
Mean single sequence MFE | -21.90 |
Consensus MFE | -6.56 |
Energy contribution | -7.68 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.11 |
Mean z-score | -2.80 |
Structure conservation index | 0.30 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.783643 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6069817 105 + 27905053 AAAAGUGAGGAGAUGAUUGAAAAAGAAACCUCUUCGAAUCCGAAAGAGGAUUCACACGAAUCGGAAGCCGCUACAAAUAAAAAGGUGGAAGGCAAUCGCGAGCUU ..((((((((((....((....)).....))))))((((((......)))))).......(((((.(((.((((..........))))..)))..)).))))))) ( -26.00) >DroSec_CAF1 69981 102 + 1 AAAAGUGAAGAGAUAAUUGAAAACGACACCUCU---AAGCCGAAAGAGGAUUCACAAGAAUCGAAAACUGCCACAAAUAAAAAGGUGGAAGCUAAUCGAAAGCUU ....(((((.......(((....)))..(((((---........))))).)))))(((..((((...((.((((..........)))).))....))))...))) ( -18.60) >DroSim_CAF1 71456 102 + 1 AAAAGUGAGGAGAUGAUUGAAAAAGAAACCUCU---AAGCCGAAAGAGGAUUCACAAGAAUCGAAAACUGCUACUAAUAAAAAGGUGGAAGCUAAUCGAAAGCUU ...(((.....(((..(((.....(((.(((((---........))))).))).)))..)))....))).(((((........)))))(((((.......))))) ( -19.00) >DroEre_CAF1 72651 96 + 1 AAAAGUGAAGAGCGCAUUGGAAAAGAAACCUCC---AAGUCGAAAGAGGAUUCACA------GGAAACUGAUUCAACUAAAAAGGUGGAAACCAAUCCAAAGCUU .........((((...(((((...(((.((((.---.........)))).))).((------(....))).............(((....)))..))))).)))) ( -25.30) >DroYak_CAF1 73187 102 + 1 AAAAGUGAAGAGAGUGUUGAAAAACAAACCUCU---GAGUCAAAAGAUGAUUCACAAGAAUUGGAAACUUCAACAACUAAAAAGGUGGAAUCCAAUCGAAAGCUU ..((((..((((..((((....))))...))))---((((((.....))))))....((.(((((...(((....(((.....))).))))))))))....)))) ( -20.60) >consensus AAAAGUGAAGAGAUGAUUGAAAAAGAAACCUCU___AAGCCGAAAGAGGAUUCACAAGAAUCGGAAACUGCUACAAAUAAAAAGGUGGAAGCCAAUCGAAAGCUU ..((((...((.............(((.(((((...........))))).)))..............(((((...........))))).......))....)))) ( -6.56 = -7.68 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:00 2006