Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,068,228 – 6,068,342 |
Length | 114 |
Max. P | 0.644202 |
Location | 6,068,228 – 6,068,342 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 76.40 |
Mean single sequence MFE | -40.19 |
Consensus MFE | -23.69 |
Energy contribution | -23.03 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.36 |
Mean z-score | -1.51 |
Structure conservation index | 0.59 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.644202 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6068228 114 - 27905053 UUGGAGCCCAAGAUUUGGGUCUCUGCCGCUCCAAGCUCGUCUCCCUGGAACCGGCCAAUUGCUU---CUGCUCCUUGAGCUUGCGUGCUAGUUUAGCCUUCUGCUUGGGACUCUUCU ..((((((((((....((((..(((.(((..((((((((......(((......)))...((..---..))....)))))))).))).)))....))))....)))))).))))... ( -38.20) >DroPse_CAF1 71012 117 - 1 UGGGAGCCCAGGACUUUGGUCUCUGGCGCUCCAAGCUCGCCUCUCGGGACCCCGUCAACAGCUGCGGCUUCUCCUUUAGCUUGCGCGCCAGUCUCGCCUUUUGCUUGGGACUUUUCU .(((((((((((.....(((..(((((((..((((((........((((..((((........))))..))))....)))))).)))))))....))).....)))))).))))).. ( -44.30) >DroSim_CAF1 69868 114 - 1 UUGGAGCCCAAGAUUUGGGUCUCUGCCGCUCCAAGCUCGUGUCCCUGGAACCGGCCAACUGCUU---CUGCUCCUUGAGCUUGCGUGCUAGCUUGGCCUUCUGCUUGGGACUCUUCU ..((((((((((....(((((...((.((.(((((((((.......((((.(((....))).))---))......)))))))).).))..))..)))))....)))))).))))... ( -42.82) >DroWil_CAF1 76187 114 - 1 CUGGUGCCCAGGAUUUCGGUCGUUGACGCUCUGCGCUGGACUCCCGAGACCC---CAAAUGCUGACUCUUCUCUUUGAGCUUACGUGCCACCUUCGCCUUACGCUUGGGGCUUUUUU .(((..(...((.((((((..(((.((((...))).).)))..)))))).))---..........(((........))).....)..))).....((((((....))))))...... ( -30.50) >DroMoj_CAF1 87661 114 - 1 UAGGCGCCCAGGACUUGGGUCUCCUGCGCUCCAGGCUAGGCUCUCGUGAUACAGCCAGCUUGGG---CUUCUCUUUCAGUUUGCGUGCCAGCUUCGCCUUGCGCCUGGGACUCUGCU ((((..((((((....((((...((((((.(((((((.((((..........)))))))))))(---(..((.....))...))))).)))....))))....))))))..)))).. ( -41.70) >DroPer_CAF1 67660 117 - 1 UGGGAGCCCAGGACUUUGGUCUCUGGCGCUCCAAGCUCGCCUCUCGGGACCCCGUCAACAGCUGCGGCUUCUCCUUUAGCUUGCGCGCCAGCCUCGCCUUUUGCUUGGGACUUUUCU .(((((((((((.....(((..(((((((..((((((........((((..((((........))))..))))....)))))).)))))))....))).....)))))).))))).. ( -43.60) >consensus UUGGAGCCCAGGACUUGGGUCUCUGGCGCUCCAAGCUCGCCUCCCGGGACCCCGCCAACUGCUG___CUUCUCCUUGAGCUUGCGUGCCAGCUUCGCCUUCUGCUUGGGACUCUUCU ..((((((((((.....(((..(((.(((..((((((........................................)))))).))).)))....))).....)))))).))))... (-23.69 = -23.03 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:57 2006