Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,065,501 – 6,065,592 |
Length | 91 |
Max. P | 0.500000 |
Location | 6,065,501 – 6,065,592 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 72.43 |
Mean single sequence MFE | -46.37 |
Consensus MFE | -21.45 |
Energy contribution | -24.40 |
Covariance contribution | 2.95 |
Combinations/Pair | 1.23 |
Mean z-score | -1.65 |
Structure conservation index | 0.46 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6065501 91 - 27905053 UCAUCGUCGGCAGCGGCGGUGGC------------GGAGGGGGCGUGUCCGGAUCCGGAGGCAGUGGGGCUGGUCCCGUGGCCUC---CGCCAUUGCGGGUCAGCA .....((.(((..(.((((((((------------(((((..((((.((((....)))).))...((((....))))))..))))---))))))))).)))).)). ( -49.80) >DroSec_CAF1 65675 91 - 1 UCAUCGUCGGCAGCGGCGGAGGC------------GGAGGGAGCGUGUCCGGAUCCGGAGGCGGUGGGGCUGGUCCCGUGGCCUC---CGCCAUUGCGGGUCAGCA .....(((.((((.(((((((((------------.(.((((.(((.((((....)))).))((.....))).)))).).)))))---)))).)))).)).).... ( -48.70) >DroSim_CAF1 67155 91 - 1 UCAUCGUCGGCAGCGGCGGAGGC------------GGAGGGAGCGUGUCCGGAUCCGGAGGCGGUGGGGCUGGUCCCGUGGCCUC---CGCCAUUGCGGGUCAGCA .....(((.((((.(((((((((------------.(.((((.(((.((((....)))).))((.....))).)))).).)))))---)))).)))).)).).... ( -48.70) >DroYak_CAF1 68528 103 - 1 UCAUCGUCGGCAGCGGCGGAGGCUGAGGCUGAGGCGGAUGGGGCGUGGCCGGAUCCGGAGGCGGUGGGGCUGGUCCCGUGGCCUC---CGCCAUUGCGGGUCAGCA .....(((.((((.((((((((((...((....))..(((((((.(((((....(((....)))...))))))))))))))))))---)))).)))).)).).... ( -51.70) >DroAna_CAF1 58990 82 - 1 UCAUCGUCGGUGGCU---------------------UGGCCUGUGCCUCCGGCAGUGGGGGCAGUGGGGGUGCUCCCGGGUCCUC---CGCCAUUGCGGGUCAGCA .(((.....)))(((---------------------.((((((((((((((....))))))).(((((((.(((....)))))))---)))....)))))))))). ( -40.50) >DroPer_CAF1 64914 76 - 1 UCCUCAUCGCUGGCGACUGCAGC------------GG------------------CGGUGGUGCUGGAGCUGCUUUCGUGGCCUCCACCGCCAUUGCGUGUCAGCA ........(((((((...((((.------------((------------------((((((....((.((..(....)..)))))))))))).)))).))))))). ( -38.80) >consensus UCAUCGUCGGCAGCGGCGGAGGC____________GGAGGGAGCGUGUCCGGAUCCGGAGGCGGUGGGGCUGGUCCCGUGGCCUC___CGCCAUUGCGGGUCAGCA ...((((((....))))))........................(((.((((....)))).))).....(((((.((((((((.......)))...)))))))))). (-21.45 = -24.40 + 2.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:56 2006