Locus 2120

Sequence ID 3R_DroMel_CAF1
Location 6,063,234 – 6,063,330
Length 96
Max. P 0.968445
window3466

overview

Window 6

Location 6,063,234 – 6,063,330
Length 96
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 76.53
Mean single sequence MFE -29.15
Consensus MFE -18.00
Energy contribution -19.34
Covariance contribution 1.34
Combinations/Pair 1.21
Mean z-score -2.19
Structure conservation index 0.62
SVM decision value 1.63
SVM RNA-class probability 0.968445
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6063234 96 + 27905053
ACACAAGACGCAUGUGACACUGGCCAAA-GUUUAGUUUUGGUCAGGGCCAAA---AACGUUUGGGCCAGAAUGUGGGC----UAACUAUCGCAGCCUUGACAAA--
...((((..((.(((((..(((((((((-(.....))))))))))((((...---.((((((......)))))).)))----).....))))))))))).....-- ( -32.50)
>DroSec_CAF1 63427 84 + 1
AGACAAGACGCAUGUGACACUGGCCAAA-GUUUAGUUUUGGUCAGGGCCAAA---AACGUUCGGGCCAGAA----------------UUCGCAGCCUUGACAAA--
...((((..((.(((((..((((((...-(.....(((((((....))))))---).....).))))))..----------------.))))))))))).....-- ( -30.00)
>DroSim_CAF1 64885 96 + 1
ACACAAGACGCAUGUGACACUGGCCAAA-GUUUAGUUUUGGUCAGGGCCAAA---AACGUUCGGGCCAGAAUGUGGGC----UAACAUUCGCAGCCUUGACAAA--
...((((..((.(((((..(((((((((-(.....))))))))))((((...---.((((((......)))))).)))----).....))))))))))).....-- ( -34.90)
>DroEre_CAF1 63823 96 + 1
ACCCAAGACGCAUGUGACUCUGGCCAAA-GUUUAGUUUUGGUCAGGGCCAAA---ACCGUUCGGGCCAGAAUGUGGGC----CAACUAUCGCAGCCUUGACAAA--
...((((..((.(((((.(((((((...-(..(.((((((((....))))))---)).)..).)))))))...(((..----...)))))))))))))).....-- ( -34.00)
>DroWil_CAF1 70761 102 + 1
AUGUAACUCGCACGUGAUGCUGCUUAAAUGUUCCGUUUUGGUCAAGGACCGACCAACUGCUCUU-CCAAACUGCC---UGCCUAAUAAUCACAGCCUUGACAUGCA
.........(((((.((((..((......))..)))).))(((((((...........((....-.......))(---((...........)))))))))).))). ( -17.30)
>DroYak_CAF1 66221 90 + 1
ACACAAGACGCAAG--AC----GCCAAA-GUUUAGUUUUGGUCAGGGCCAAA---AACGCUCGGGCUAGAAUGUGGGC----UAACUAUCGCAGCCUUGACAAA--
...((((((...((--((----......-)))).))))))((((((((....---...((....)).....(((((..----......)))))))))))))...-- ( -26.20)
>consensus
ACACAAGACGCAUGUGACACUGGCCAAA_GUUUAGUUUUGGUCAGGGCCAAA___AACGUUCGGGCCAGAAUGUGGGC____UAACUAUCGCAGCCUUGACAAA__
...((((..((.(((((..(((((((((........)))))))))((((..............)))).....................)))))))))))....... (-18.00 = -19.34 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:55 2006