Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 879,265 – 879,418 |
Length | 153 |
Max. P | 0.926944 |
Location | 879,265 – 879,379 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.69 |
Mean single sequence MFE | -29.62 |
Consensus MFE | -20.59 |
Energy contribution | -20.03 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.15 |
Mean z-score | -2.12 |
Structure conservation index | 0.70 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.926944 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 879265 114 + 27905053 UCAUAAUAAAAAAAGUGCAAUAAAAAACACGCAAUGACCAAG-----UGACUGCAGUCGGUGCAUCUCCG-GCUGCAUAAUUAAUUCACCUUACUGCAUCCCUCAGCCAUCUCCGGCUGC ..............(((((.(((....(((...........)-----))..(((((((((.......)))-)))))).............))).)))))....(((((......))))). ( -29.40) >DroSec_CAF1 47270 114 + 1 NNNNNNNNNNNNNNNNNN-NNNACAGACAUGCAAUGACCAAG-----UGACUGCAGUCGGUGCAUCUCCGGGCUGCAUAAUUAAUUCACCUUACUGCAGACCUCAGCCAUCUCCGGCUGC ..................-......((.(((((.((((...(-----(....)).)))).))))).)).(((((((((((..........))).))))).)))(((((......))))). ( -25.00) >DroSim_CAF1 46472 113 + 1 UCAUAAUAAAAAAAGGGC-AUUACAGACACGCAAUGACCAAG-----UGACUGCAGUCGGUGCAUCUCCG-GCUGCAUAAUUAAUUCACCUUACUGCAGCCCUCAGCCAUCUCCGGCUGC .............(((((-....(((.(((...........)-----))..(((((((((.......)))-))))))................)))..)))))(((((......))))). ( -34.40) >DroEre_CAF1 46384 118 + 1 UCAUAAUAAAAACAGGGC-AUUAAACACACGCAAUGGCCAUUUGGACCGACUGCAGUCGGCGCAUCUCCG-GCUGCAUAAUUAAUUCACCUUACUGUAUUCCUCGGCCAGCUCCGGCUGC ....((((.....((((.-(((((..........(((((....)).)))..(((((((((.......)))-))))))...))))).).))).....))))...(((((......))))). ( -29.70) >consensus UCAUAAUAAAAAAAGGGC_AUUAAAGACACGCAAUGACCAAG_____UGACUGCAGUCGGUGCAUCUCCG_GCUGCAUAAUUAAUUCACCUUACUGCAGCCCUCAGCCAUCUCCGGCUGC ..............................(((.(((..............(((((((((.......))).)))))).............))).)))......(((((......))))). (-20.59 = -20.03 + -0.56)
Location | 879,305 – 879,418 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.84 |
Mean single sequence MFE | -38.56 |
Consensus MFE | -29.95 |
Energy contribution | -29.58 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.06 |
Mean z-score | -1.66 |
Structure conservation index | 0.78 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.625072 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 879305 113 + 27905053 AG-----UGACUGCAGUCGGUGCAUCUCCG-GCUGCAUAAUUAAUUCACCUUACUGCAUCCCUCAGCCAUCUCCGGCUGCAGUG-CCAUCUACCGGGCCAGAGGUCAAUUAAGUGCUUUG ((-----(.(((((((((((.......)))-))))))...((((((.(((((((((((.......(((......)))))))))(-((........)))..))))).)))))))))))... ( -37.71) >DroSec_CAF1 47309 115 + 1 AG-----UGACUGCAGUCGGUGCAUCUCCGGGCUGCAUAAUUAAUUCACCUUACUGCAGACCUCAGCCAUCUCCGGCUGCAGCGGCCACCUACCGGGCCAGAGGUCAAUUAAGUGCUUUG ((-----(.(((((((((((.......)).)))))))...((((((.(((((.((((((.((..((....))..)))))))).((((........)))).))))).)))))))))))... ( -38.90) >DroSim_CAF1 46511 113 + 1 AG-----UGACUGCAGUCGGUGCAUCUCCG-GCUGCAUAAUUAAUUCACCUUACUGCAGCCCUCAGCCAUCUCCGGCUGCAGCG-CCACCUACCGGGCCAGAGGUCAAUUAAGUGCUUUG ((-----(.(((((((((((.......)))-))))))...((((((.(((((.((((((((.............)))))))).(-((........)))..))))).)))))))))))... ( -41.52) >DroEre_CAF1 46423 118 + 1 UUUGGACCGACUGCAGUCGGCGCAUCUCCG-GCUGCAUAAUUAAUUCACCUUACUGUAUUCCUCGGCCAGCUCCGGCUGCAGCG-CCAUCUACCGGGCCAGAGGUCAAUUAAGUGUGUUG .......((((.((((((((.......)))-)))))(((.((((((.(((((.........(((((((......))))).)).(-((........)))..))))).)))))).))))))) ( -36.10) >consensus AG_____UGACUGCAGUCGGUGCAUCUCCG_GCUGCAUAAUUAAUUCACCUUACUGCAGCCCUCAGCCAUCUCCGGCUGCAGCG_CCACCUACCGGGCCAGAGGUCAAUUAAGUGCUUUG ...........(((((((((.......))).))))))...((((((.(((((...((....(((((((......))))).))...((.......))))..))))).))))))........ (-29.95 = -29.58 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:41 2006