Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,042,135 – 6,042,235 |
Length | 100 |
Max. P | 0.782316 |
Location | 6,042,135 – 6,042,235 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 83.09 |
Mean single sequence MFE | -25.76 |
Consensus MFE | -17.69 |
Energy contribution | -20.17 |
Covariance contribution | 2.47 |
Combinations/Pair | 1.12 |
Mean z-score | -2.61 |
Structure conservation index | 0.69 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.782316 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6042135 100 + 27905053 UUCCUUUGAGUUGCAAGUGACUCACCGAUUGGCACUGCAUAUUUGCAUUAAUUAAUUGCCAUUUACUGGCGCAAAUAUUACACAUUCAAGUGCCGUUCAU--- ......(((((((....)))))))..((.(((((((..(((((((((((....))).((((.....))))))))))))..........))))))).))..--- ( -27.30) >DroSec_CAF1 48059 100 + 1 UUCCUUUGAGUUGCAAGUGACUCACCGAUUGGCACUGCAUAUGUGCAUUAAUUAAUUGCCAUUUACUGGCGCAAAUAUUACACAUUCAAGUGCCGUUCAU--- ......(((((((....)))))))..((.(((((((....(((((...((((....(((((.....))))).....)))))))))...))))))).))..--- ( -29.20) >DroSim_CAF1 49323 100 + 1 UUCCUUUGAGUUGCAAGUGACUCACCGAUUGGCACUGCAUAUGUGCAUUAAUUAAUUGCCAUUUACUGGCGCAAAUAUUACACAUUCAAGUGCCGUUCAU--- ......(((((((....)))))))..((.(((((((....(((((...((((....(((((.....))))).....)))))))))...))))))).))..--- ( -29.20) >DroEre_CAF1 48523 98 + 1 UUUCUUUGAGUUGCAAGUGACUCACCGAUCGGCACUGCAUAUGUGCAUUUAUUAAUUGCCAU-UACUGGCGCAAAUAUUCCGCAUUCAAGUGCAA-GCAU--- ..((..(((((((....)))))))..))...(((((....(((((....((((...(((((.-...)))))..))))...)))))...)))))..-....--- ( -24.70) >DroWil_CAF1 54986 90 + 1 CUCAUUUGAGUG-C-GCCGACU-GUCGAUUUGCAGCACAUAUGCACAUAAAUUAAUUGCAAUAAAUU---GCACAUUUUGCUCAUUCUAAAGCGC----U--- .......(((((-.-((.((.(-(((((((((..(((...((........))....)))..))))))---).))).)).)).)))))........----.--- ( -16.30) >DroYak_CAF1 50492 103 + 1 UUCCUUUGAGUUGCAAGUGACUCACCGAUUGGCACUGCAUAUGUGCAUUAAUUAAUUGCCAUUUACUGGCGCAAAUAUUCCGCAUUCAAGUGCCGUUCAUUAC ......(((((((....)))))))..((.(((((((....(((((...........(((((.....))))).........)))))...))))))).))..... ( -27.85) >consensus UUCCUUUGAGUUGCAAGUGACUCACCGAUUGGCACUGCAUAUGUGCAUUAAUUAAUUGCCAUUUACUGGCGCAAAUAUUACACAUUCAAGUGCCGUUCAU___ ......(((((((....)))))))..((.(((((((....(((((...........(((((.....))))).........)))))...))))))).))..... (-17.69 = -20.17 + 2.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:47 2006