Locus 2115

Sequence ID 3R_DroMel_CAF1
Location 6,041,021 – 6,041,118
Length 97
Max. P 0.758954
window3457

overview

Window 7

Location 6,041,021 – 6,041,118
Length 97
Sequences 4
Columns 107
Reading direction reverse
Mean pairwise identity 78.41
Mean single sequence MFE -27.60
Consensus MFE -19.91
Energy contribution -20.73
Covariance contribution 0.81
Combinations/Pair 1.05
Mean z-score -1.69
Structure conservation index 0.72
SVM decision value 0.50
SVM RNA-class probability 0.758954
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6041021 97 - 27905053
GCUGCACUUGGUAGGAUAAUUGCCAAUUGCAAAACGACGACGGCUUUUGUCUGCUGACAGUUGC----------AAGGUCAGACAAUCAGACCAUUCAGACCAUUCA
..((((.(((((((.....))))))).))))...........((..(((((....)))))..))----------..((((.(.....).)))).............. ( -25.90)
>DroEre_CAF1 47462 86 - 1
GCUGCACUUGGUACGAUAAUAGCCAAUUGCAAAACGACGACGGCUUUUGUCUGCUGACAGUUGC----------AAGGUCAGACAAUCAGACCAUU-----------
..((((.(((((.........))))).))))...........((..(((((....)))))..))----------..((((.(.....).))))...----------- ( -23.10)
>DroYak_CAF1 49333 86 - 1
GCUGCACUUGGUAGGAUAAUUGCCAAUUGCAAAACGACGACGGCUUUUGUCUGCUGACAGUUGC----------AAGGUCAGGCAAUCAGACCAUU-----------
((((((.(((((((.....))))))).)))........(((.((..(((((....)))))..))----------...))).)))............----------- ( -26.30)
>DroPer_CAF1 45848 91 - 1
GCUGCACUUGGUAGGAUAAUUGGCGAUUGCAUUG---CGGCGGCUUUUGUCUGCUGACAGUUGCCGUUGAGCUCAAGGUCAA-UUGUCGGUCCAG------------
.((((.....))))((((((((((..(((.....---(((((((..(((((....)))))..)))))))....))).)))))-))))).......------------ ( -35.10)
>consensus
GCUGCACUUGGUAGGAUAAUUGCCAAUUGCAAAACGACGACGGCUUUUGUCUGCUGACAGUUGC__________AAGGUCAGACAAUCAGACCAUU___________
..((((.(((((((.....))))))).))))...........((..(((((....)))))..))............((((.........)))).............. (-19.91 = -20.73 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:46 2006