Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,036,714 – 6,036,827 |
Length | 113 |
Max. P | 0.995889 |
Location | 6,036,714 – 6,036,827 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 94.13 |
Mean single sequence MFE | -24.98 |
Consensus MFE | -22.42 |
Energy contribution | -21.94 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.11 |
Mean z-score | -1.97 |
Structure conservation index | 0.90 |
SVM decision value | 2.63 |
SVM RNA-class probability | 0.995889 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6036714 113 - 27905053 CAAACAAUAAAAAACCACAAAAGCUGGGCAAAUAAAAUUGUCAUAAUCGAUGAUUGUGAAUGUGGCUUUUCCCUCGCACAUCAUUCAAUUUGCCAUAUUUGGCGAAUGCUUUU ..................((((((..(((((......)))))......((((((.(((...(.((.....)))...)))))))))..((((((((....)))))))))))))) ( -25.30) >DroSec_CAF1 42569 112 - 1 CAAACAAUAAAAAACCACAA-AGCCGGGCAAAUAAAAUUGUCAUAAUCGAUGAUUGUGAAUGUGGCUUUUCCCUCGCACAUCAUUCAAUUCGCCAUAUUCGGUGAAUGCUUUU ..................((-(((.(((.(((........((((((((...))))))))........))))))..............(((((((......)))))))))))). ( -23.09) >DroSim_CAF1 42977 112 - 1 CAAACACUAAAAAACCACAA-AGCCGGGCGAAUAAAAUUGUCAUAAUCGAUGAGUGUGAAUGUGGCUUUUCCCUCGCACAUCAUUCAAUUCGCCAUAUUCGGCGAAUGCUUUU ..................((-(((..(((((......)))))......(((((((((((....((......)))))))).)))))..(((((((......)))))))))))). ( -26.60) >DroEre_CAF1 43063 112 - 1 CAAUCAAUAAAAAACCACAA-AGCCGGGCAAAUAAAAUUGUCAUAUGCGAUGAUUGUGAAUGUGGCAUUUCCCUCGCACAUCAUUCAAUUCGCCAUAUUCGGCGAAUGCUUUU ..................((-(((..(((((......)))))...((.((((((.(((...(.((.....)))...)))))))))))(((((((......)))))))))))). ( -25.20) >DroYak_CAF1 44797 112 - 1 CAAUCAACAAAAAACCACAA-AGCCGGGCAAAUAAAAUUGUCAUAUUCGAUGAUUGUGAAUGCGGCAUUUCCCUCGCACAUCAUUCAAUUCGCCAUAUACGGCGAAUGCUUUU ..................((-(((..(((((......)))))......((((((.(((...(.((.....)))...)))))))))..(((((((......)))))))))))). ( -24.70) >consensus CAAACAAUAAAAAACCACAA_AGCCGGGCAAAUAAAAUUGUCAUAAUCGAUGAUUGUGAAUGUGGCUUUUCCCUCGCACAUCAUUCAAUUCGCCAUAUUCGGCGAAUGCUUUU .....................(((..(((((......)))))......(((((.((((...(.((.....)))...)))))))))..(((((((......))))))))))... (-22.42 = -21.94 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:45 2006