Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 871,212 – 871,332 |
Length | 120 |
Max. P | 0.981568 |
Location | 871,212 – 871,332 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.25 |
Mean single sequence MFE | -35.45 |
Consensus MFE | -33.66 |
Energy contribution | -33.60 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.06 |
Mean z-score | -2.65 |
Structure conservation index | 0.95 |
SVM decision value | 1.89 |
SVM RNA-class probability | 0.981568 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 871212 120 - 27905053 CGUUUUGUAAGCAGAACGUAACGCACGUUCGCAUAAAAAGCAACAGCAACAAAAAAGCAACAGCAAUUGUGGGACCGGCAGCGGAAACAAGCUGCACACAAUGGAUCCAUACCCGAGCUG .(((((.((.((.((((((.....)))))))).)).)))))..((((.........((....))...((((((.(((((((((....)..)))))......))).)))))).....)))) ( -35.00) >DroSec_CAF1 46214 120 - 1 CGUUUUGUUAGCAGAACGUAACGCACGUUCGCAUAAAAAGCAACAGCAACAAAAAAGCAACAGCAAUUGCGGGACCGGCAGCGGAAACAAGCCGCACACAAUGGAUCCAUACCCGAGCUG ..(((((((.((.((((((.....))))))((.......))....)))))))))......((((.....((((..((((...(....)..))))......(((....))).)))).)))) ( -34.60) >DroSim_CAF1 45484 120 - 1 CGUUUUGUAAGCAGAACGUAACGCACGUUCGCAUAAAAAGCAACAGCAACAAAAAAGCAACAGCAAUUGCGGGACCGGCAGCGGAAACAAGCUGCACACAAUGGAUCCAUACCCGAGCUG .(((((.((.((.((((((.....)))))))).)).)))))..((((.........((((......))))(((....((((((....)..))))).....(((....))).)))..)))) ( -36.90) >DroEre_CAF1 45417 120 - 1 CGUUUUGUAAGCAGAACGUAACGCACGUUCGCAUAAAAAGCAGCAGCAACAAAAAAGGAACAGCGAUUGCGGGAACGGCGGCGGAAACAAGCUGCACACAAUGGAUCCAUGCCCGAGCUG ..((((((..((.((((((.....)))))))).......((....)).))))))......((((.....((((....((((((....)..))))).....(((....))).)))).)))) ( -35.30) >consensus CGUUUUGUAAGCAGAACGUAACGCACGUUCGCAUAAAAAGCAACAGCAACAAAAAAGCAACAGCAAUUGCGGGACCGGCAGCGGAAACAAGCUGCACACAAUGGAUCCAUACCCGAGCUG ..((((((..((.((((((.....)))))))).......((....)).))))))......((((.....((((....((((((....)..))))).....(((....))).)))).)))) (-33.66 = -33.60 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:39 2006