| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,019,673 – 6,019,774 |
| Length | 101 |
| Max. P | 0.542775 |
| Location | 6,019,673 – 6,019,774 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 77.26 |
| Mean single sequence MFE | -31.37 |
| Consensus MFE | -25.24 |
| Energy contribution | -24.85 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.11 |
| Mean z-score | -0.75 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.542775 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6019673 101 + 27905053 CCACUGUCAAUAUUAGCGCCAUCGCAACUGCUGGGUGUGGGCGAAUCUGCGCCCCGCCACCGGUAAGACUGUUCCAAGAU------UCGUUCG-----CGCU---UUCAGAACCC ...............(((....)))..(((..(((((((((((((((((((...)))...(((.....))).....))))------)))))))-----))))---).)))..... ( -30.00) >DroSec_CAF1 31439 97 + 1 CCACUGUCAAUAUUAGCGCCAUCGCAACUGCUGGGUGUGGGCGAAUCUGCGCCCCGCCACCGGUAAGACUGUUCCAAGAU------UCGU------------UCUGAAAGAACCC .....(((.......(((....))).((((...((((.(((((......)))))))))..))))..))).((((..(((.------....------------)))....)))).. ( -29.40) >DroWil_CAF1 33194 88 + 1 UCACUGUCAAUAUUAGCGCCAUUGCAACUGCAGGGUGUGGGCGAAUCUGCGCCCCGCCGCCGGUAAGACUGUUUCAAGGA------CCA-----------CC----UUC------ ..((.(((..(((..((....((((....))))((((.(((((......)))))))))))..))).))).))...((((.------...-----------))----)).------ ( -28.80) >DroYak_CAF1 33355 101 + 1 CCACUGUCAAUAUUAGCGCCAUCGCAACUGCUGGGUGUGGGCGAAUCUGCGCCCCGCCACCGGUAAGACUGUUCCAUGAU------UCGCUCG-----CGCC---UUCAGAACUU ...............(((....)))..(((..(((((((((((((((.(((...)))...(((.....)))......)))------)))))))-----))))---).)))..... ( -33.90) >DroMoj_CAF1 38647 92 + 1 CCACGGUCAAUAUUAGCGCCAUUGCAACUGCUGGGUGUGGGCGAAUCUGCGCCCCGCCACCGGUAAGGCAGGGCCGAGCUCUCGAAUCGCUC----------------------- ..............((((((.((((...(((((((((.(((((......))))))))..))))))..)))))))(((....)))....))).----------------------- ( -34.00) >DroAna_CAF1 28124 102 + 1 CCACUGUCAAUAUUAGCGCCAUUGCAACUGCUGGGUGUGGGCGAAUCUGCGCCCCGCCACCGGUAAGACUGUUCCGAGGC------C--CUCGGACACCACU---CUCAG--CUC ..............((((((...((....))..((((.(((((......)))))))))...))).(((.((.((((((..------.--))))))...)).)---))..)--)). ( -32.10) >consensus CCACUGUCAAUAUUAGCGCCAUCGCAACUGCUGGGUGUGGGCGAAUCUGCGCCCCGCCACCGGUAAGACUGUUCCAAGAU______UCGCUC________C_____UCAG__C_C .....(((.......(((....))).((((...((((.(((((......)))))))))..))))..))).............................................. (-25.24 = -24.85 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:38 2006