Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,003,797 – 6,003,888 |
Length | 91 |
Max. P | 0.500000 |
Location | 6,003,797 – 6,003,888 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 80.62 |
Mean single sequence MFE | -28.21 |
Consensus MFE | -18.12 |
Energy contribution | -17.57 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.27 |
Mean z-score | -1.36 |
Structure conservation index | 0.64 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6003797 91 + 27905053 UUGG--AUCGGCAGUUUUCCAGCUGCCCGAGGAUUGCCUCAUAGUUCACAGUUGGUGGGGUUUUGG--CA-GGGUCUUUGCACUAACUCACUGCCU ....--...((((((...(((((((...((((....))))........)))))))..(((((...(--((-(.....))))...))))))))))). ( -29.70) >DroPse_CAF1 15263 95 + 1 GCUGCUUUUGGCGGUUUUCCAGCUGCCA-GCGAUUGCCUAACAAUUCACAGUUGGUGAUUUUUUCGGUUAGGGGCUUUUCCACUAGCUGUCUGCCU ........(((((((......)))))))-(((((..((.(((........)))))..)))....((((((((((....))).)))))))...)).. ( -28.40) >DroSec_CAF1 15652 91 + 1 UUGG--AUCGGCAGUUUUCCAGCUGCCCGAGGAUUGCCUCAUAGUUCACAGUUGGUGGAUUUUCGG--CA-GGGUCUUUGCACUAACUCACUGCCU ....--...((((((.......(((((.((((....))))..(((((((.....)))))))...))--))-)(((......))).....)))))). ( -28.60) >DroEre_CAF1 16095 91 + 1 UUGC--AUCGGCAGUUUUCCAGCUGCUAAAAGAUUGCCUCAUAGUUCACAGUUGGUGGCUUUUUGG--CA-GGGUCUCUGCACUAACUCACUGCCU ....--...((((((.......((((((((((.(..((...............))..).)))))))--))-)(((......))).....)))))). ( -25.56) >DroYak_CAF1 17288 91 + 1 UUGG--AUCGGCAGUUUUCCAGCUGCCCUAAGAUUGCCCCAUAGUUCACAGUUGGUGGCUUUUUGG--CA-GGGUCUUUGCACUAGCUCGCUGCCU ....--...((((((......))))))...(((..((((((...........))).)))..)))((--((-(.(.....((....)).).))))). ( -28.60) >DroPer_CAF1 15349 95 + 1 GCUGCUUUUGGCGGUUUUCCAGCUGCCA-GCGAUUGCCUAACAAUUCACAGUUGGUGAUUUUUUCGGUUAGGGGCUUUUCCACUAGCUGUCUGCCU ........(((((((......)))))))-(((((..((.(((........)))))..)))....((((((((((....))).)))))))...)).. ( -28.40) >consensus UUGG__AUCGGCAGUUUUCCAGCUGCCA_AAGAUUGCCUCAUAGUUCACAGUUGGUGGCUUUUUGG__CA_GGGUCUUUGCACUAACUCACUGCCU .........((((((...(((((((......(((((.....)))))..)))))))................((((..........)))))))))). (-18.12 = -17.57 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:33 2006